FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5109, 606 aa
  1>>>pF1KB5109 606 - 606 aa - 606 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7256+/-0.00152; mu= 6.0443+/- 0.089
 mean_var=152.1541+/-33.285, 0's: 0 Z-trim(102.5): 147  B-trim: 14 in 1/48
 Lambda= 0.103976
 statistics sampled from 6825 (6977) to 6825 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.558), E-opt: 0.2 (0.214), width:  16
 Scan time:  3.020

The best scores are:                                      opt bits E(32554)
CCDS54740.1 WDR1 gene_id:9948|Hs108|chr4           ( 606) 4113 630.2 2.4e-180
CCDS54739.1 WDR1 gene_id:9948|Hs108|chr4           ( 466) 2863 442.6 5.3e-124


>>CCDS54740.1 WDR1 gene_id:9948|Hs108|chr4                (606 aa)
 initn: 4113 init1: 4113 opt: 4113  Z-score: 3351.4  bits: 630.2 E(32554): 2.4e-180
Smith-Waterman score: 4113; 99.8% identity (100.0% similar) in 606 aa overlap (1-606:1-606)

               10        20        30        40        50        60
pF1KB5 MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 FKFTVGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYAI
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYAI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 SWSPDSTHLLSASGDKTSKIWDVSVNSVVSTFPMGSTVLDQQLGCLWQKDHLLSVSLSGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SWSPDSTHLLSASGDKTSKIWDVSVNSVVSTFPMGSTVLDQQLGCLWQKDHLLSVSLSGY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 INYLDRNNPSKPLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 INYLDRNNPSKPLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 GKGHTNQVSRMTVDESGQLISCSMDDTVRYTSLMLRDYSGQGVVKLDVQPKCVAVGPGGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GKGHTNQVSRMTVDESGQLISCSMDDTVRYTSLMLRDYSGQGVVKLDVQPKCVAVGPGGY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 AVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVRLYSILGTTLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVRLYSILGTTLK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK
              550       560       570       580       590       600

             
pF1KB5 EWTITY
       ::::::
CCDS54 EWTITY
             

>>CCDS54739.1 WDR1 gene_id:9948|Hs108|chr4                (466 aa)
 initn: 2863 init1: 2863 opt: 2863  Z-score: 2339.7  bits: 442.6 E(32554): 5.3e-124
Smith-Waterman score: 2879; 76.9% identity (76.9% similar) in 606 aa overlap (1-606:1-466)

               10        20        30        40        50        60
pF1KB5 MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQ
       ::::::::::::::::::::::::::::::::::::::::::::::              
CCDS54 MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNID--------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KB5 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV
                                                                   
CCDS54 ------------------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KB5 GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK
                                                                   
CCDS54 ------------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KB5 FKFTVGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYAI
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ------DHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYAI
               50        60        70        80        90       100

              250       260       270       280       290       300
pF1KB5 SWSPDSTHLLSASGDKTSKIWDVSVNSVVSTFPMGSTVLDQQLGCLWQKDHLLSVSLSGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SWSPDSTHLLSASGDKTSKIWDVSVNSVVSTFPMGSTVLDQQLGCLWQKDHLLSVSLSGY
              110       120       130       140       150       160

              310       320       330       340       350       360
pF1KB5 INYLDRNNPSKPLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 INYLDRNNPSKPLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA
              170       180       190       200       210       220

              370       380       390       400       410       420
pF1KB5 GKGHTNQVSRMTVDESGQLISCSMDDTVRYTSLMLRDYSGQGVVKLDVQPKCVAVGPGGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GKGHTNQVSRMTVDESGQLISCSMDDTVRYTSLMLRDYSGQGVVKLDVQPKCVAVGPGGY
              230       240       250       260       270       280

              430       440       450       460       470       480
pF1KB5 AVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVRLYSILGTTLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVRLYSILGTTLK
              290       300       310       320       330       340

              490       500       510       520       530       540
pF1KB5 DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW
              350       360       370       380       390       400

              550       560       570       580       590       600
pF1KB5 SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK
              410       420       430       440       450       460

             
pF1KB5 EWTITY
       ::::::
CCDS54 EWTITY
             




606 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:06:13 2016 done: Thu Nov  3 16:06:14 2016
 Total Scan time:  3.020 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]