FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5110, 638 aa
  1>>>pF1KB5110 638 - 638 aa - 638 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9366+/-0.00108; mu= 12.5763+/- 0.065
 mean_var=121.7494+/-23.895, 0's: 0 Z-trim(106.5): 22  B-trim: 38 in 1/51
 Lambda= 0.116236
 statistics sampled from 9041 (9047) to 9041 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.278), width:  16
 Scan time:  3.210

The best scores are:                                      opt bits E(32554)
CCDS31717.1 SRPRA gene_id:6734|Hs108|chr11         ( 638) 4109 700.7 1.5e-201
CCDS53722.1 SRPRA gene_id:6734|Hs108|chr11         ( 610) 3661 625.6  6e-179


>>CCDS31717.1 SRPRA gene_id:6734|Hs108|chr11              (638 aa)
 initn: 4109 init1: 4109 opt: 4109  Z-score: 3731.9  bits: 700.7 E(32554): 1.5e-201
Smith-Waterman score: 4109; 100.0% identity (100.0% similar) in 638 aa overlap (1-638:1-638)

               10        20        30        40        50        60
pF1KB5 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 LATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 GKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSSDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSSDD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 HGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLIT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAA
              550       560       570       580       590       600

              610       620       630        
pF1KB5 ISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMKA
       ::::::::::::::::::::::::::::::::::::::
CCDS31 ISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMKA
              610       620       630        

>>CCDS53722.1 SRPRA gene_id:6734|Hs108|chr11              (610 aa)
 initn: 3914 init1: 3661 opt: 3661  Z-score: 3326.2  bits: 625.6 E(32554): 6e-179
Smith-Waterman score: 3862; 95.6% identity (95.6% similar) in 638 aa overlap (1-638:1-610)

               10        20        30        40        50        60
pF1KB5 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN
       :::::::::::::::::::::::::::::::::::::::                     
CCDS53 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQ---------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KB5 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 -------VGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL
             40        50        60        70        80        90  

              130       140       150       160       170       180
pF1KB5 LREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGP
            100       110       120       130       140       150  

              190       200       210       220       230       240
pF1KB5 LATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEK
            160       170       180       190       200       210  

              250       260       270       280       290       300
pF1KB5 GKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSSDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSSDD
            220       230       240       250       260       270  

              310       320       330       340       350       360
pF1KB5 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAV
            280       290       300       310       320       330  

              370       380       390       400       410       420
pF1KB5 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYV
            340       350       360       370       380       390  

              430       440       450       460       470       480
pF1KB5 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEK
            400       410       420       430       440       450  

              490       500       510       520       530       540
pF1KB5 HGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 HGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLIT
            460       470       480       490       500       510  

              550       560       570       580       590       600
pF1KB5 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAA
            520       530       540       550       560       570  

              610       620       630        
pF1KB5 ISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMKA
       ::::::::::::::::::::::::::::::::::::::
CCDS53 ISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMKA
            580       590       600       610




638 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:06:50 2016 done: Thu Nov  3 16:06:50 2016
 Total Scan time:  3.210 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]