FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5115, 1097 aa
  1>>>pF1KB5115 1097 - 1097 aa - 1097 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.8040+/-0.00122; mu= -5.6650+/- 0.073
 mean_var=480.0549+/-99.109, 0's: 0 Z-trim(113.5): 820  B-trim: 0 in 0/55
 Lambda= 0.058537
 statistics sampled from 13269 (14168) to 13269 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.435), width:  16
 Scan time:  5.870

The best scores are:                                      opt bits E(32554)
CCDS3509.1 REST gene_id:5978|Hs108|chr4            (1097) 7387 639.6 1.2e-182


>>CCDS3509.1 REST gene_id:5978|Hs108|chr4                 (1097 aa)
 initn: 7387 init1: 7387 opt: 7387  Z-score: 3392.9  bits: 639.6 E(32554): 1.2e-182
Smith-Waterman score: 7387; 100.0% identity (100.0% similar) in 1097 aa overlap (1-1097:1-1097)

               10        20        30        40        50        60
pF1KB5 MATQVMGQSSGGGGLFTSSGNIGMALPNDMYDLHDLSKAELAAPQLIMLANVALTGEVNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MATQVMGQSSGGGGLFTSSGNIGMALPNDMYDLHDLSKAELAAPQLIMLANVALTGEVNG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SCCDYLVGEERQMAELMPVGDNNFSDSEEGEGLEESADIKGEPHGLENMELRSLELSVVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SCCDYLVGEERQMAELMPVGDNNFSDSEEGEGLEESADIKGEPHGLENMELRSLELSVVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 PQPVFEASGAPDIYSSNKDLPPETPGAEDKGKSSKTKPFRCKPCQYEAESEEQFVHHIRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PQPVFEASGAPDIYSSNKDLPPETPGAEDKGKSSKTKPFRCKPCQYEAESEEQFVHHIRV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 HSAKKFFVEESAEKQAKARESGSSTAEEGDFSKGPIRCDRCGYNTNRYDHYTAHLKHHTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 HSAKKFFVEESAEKQAKARESGSSTAEEGDFSKGPIRCDRCGYNTNRYDHYTAHLKHHTR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 AGDNERVYKCIICTYTTVSEYHWRKHLRNHFPRKVYTCGKCNYFSDRKNNYVQHVRTHTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AGDNERVYKCIICTYTTVSEYHWRKHLRNHFPRKVYTCGKCNYFSDRKNNYVQHVRTHTG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 ERPYKCELCPYSSSQKTHLTRHMRTHSGEKPFKCDQCSYVASNQHEVTRHARQVHNGPKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ERPYKCELCPYSSSQKTHLTRHMRTHSGEKPFKCDQCSYVASNQHEVTRHARQVHNGPKP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 LNCPHCDYKTADRSNFKKHVELHVNPRQFNCPVCDYAASKKCNLQYHFKSKHPTCPNKTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LNCPHCDYKTADRSNFKKHVELHVNPRQFNCPVCDYAASKKCNLQYHFKSKHPTCPNKTM
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 DVSKVKLKKTKKREADLPDNITNEKTEIEQTKIKGDVAGKKNEKSVKAEKRDVSKEKKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DVSKVKLKKTKKREADLPDNITNEKTEIEQTKIKGDVAGKKNEKSVKAEKRDVSKEKKPS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 NNVSVIQVTTRTRKSVTEVKEMDVHTGSNSEKFSKTKKSKRKLEVDSHSLHGPVNDEESS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 NNVSVIQVTTRTRKSVTEVKEMDVHTGSNSEKFSKTKKSKRKLEVDSHSLHGPVNDEESS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 TKKKKKVESKSKNNSQEVPKGDSKVEENKKQNTCMKKSTKKKTLKNKSSKKSSKPPQKEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 TKKKKKVESKSKNNSQEVPKGDSKVEENKKQNTCMKKSTKKKTLKNKSSKKSSKPPQKEP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 VEKGSAQMDPPQMGPAPTEAVQKGPVQVEPPPPMEHAQMEGAQIRPAPDEPVQMEVVQEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VEKGSAQMDPPQMGPAPTEAVQKGPVQVEPPPPMEHAQMEGAQIRPAPDEPVQMEVVQEG
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 PAQKELLPPVEPAQMVGAQIVLAHMELPPPMETAQTEVAQMGPAPMEPAQMEVAQVESAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PAQKELLPPVEPAQMVGAQIVLAHMELPPPMETAQTEVAQMGPAPMEPAQMEVAQVESAP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB5 MQVVQKEPVQMELSPPMEVVQKEPVQIELSPPMEVVQKEPVKIELSPPIEVVQKEPVQME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MQVVQKEPVQMELSPPMEVVQKEPVQIELSPPMEVVQKEPVKIELSPPIEVVQKEPVQME
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB5 LSPPMGVVQKEPAQREPPPPREPPLHMEPISKKPPLRKDKKEKSNMQSERARKEQVLIEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LSPPMGVVQKEPAQREPPPPREPPLHMEPISKKPPLRKDKKEKSNMQSERARKEQVLIEV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB5 GLVPVKDSWLLKESVSTEDLSPPSPPLPKENLREEASGDQKLLNTGEGNKEAPLQKVGAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GLVPVKDSWLLKESVSTEDLSPPSPPLPKENLREEASGDQKLLNTGEGNKEAPLQKVGAE
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB5 EADESLPGLAANINESTHISSSGQNLNTPEGETLNGKHQTDSIVCEMKMDTDQNTRENLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EADESLPGLAANINESTHISSSGQNLNTPEGETLNGKHQTDSIVCEMKMDTDQNTRENLT
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB5 GINSTVEEPVSPMLPPSAVEEREAVSKTALASPPATMAANESQEIDEDEGIHSHEGSDLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GINSTVEEPVSPMLPPSAVEEREAVSKTALASPPATMAANESQEIDEDEGIHSHEGSDLS
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KB5 DNMSEGSDDSGLHGARPVPQESSRKNAKEALAVKAAKGDFVCIFCDRSFRKGKDYSKHLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DNMSEGSDDSGLHGARPVPQESSRKNAKEALAVKAAKGDFVCIFCDRSFRKGKDYSKHLN
             1030      1040      1050      1060      1070      1080

             1090       
pF1KB5 RHLVNVYYLEEAAQGQE
       :::::::::::::::::
CCDS35 RHLVNVYYLEEAAQGQE
             1090       




1097 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:18:52 2016 done: Thu Nov  3 22:18:53 2016
 Total Scan time:  5.870 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]