Result of FASTA (ccds) for
pF1KB5141
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5141, 523 aa
1>>>pF1KB5141 523 - 523 aa - 523 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4680+/-0.000811; mu= 17.1056+/- 0.049
mean_var=64.4455+/-12.669, 0's: 0 Z-trim(106.7): 18 B-trim: 0 in 0/54
Lambda= 0.159764
statistics sampled from 9118 (9132) to 9118 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.281), width: 16
Scan time: 3.360
The best scores are: opt bits E(32554)
CCDS10725.1 GPT2 gene_id:84706|Hs108|chr16 ( 523) 3505 816.8 0
CCDS45478.1 GPT2 gene_id:84706|Hs108|chr16 ( 423) 2869 670.1 1.3e-192
CCDS6430.1 GPT gene_id:2875|Hs108|chr8 ( 496) 2363 553.5 2e-157
>>CCDS10725.1 GPT2 gene_id:84706|Hs108|chr16 (523 aa)
initn: 3505 init1: 3505 opt: 3505 Z-score: 4362.0 bits: 816.8 E(32554): 0
Smith-Waterman score: 3505; 100.0% identity (100.0% similar) in 523 aa overlap (1-523:1-523)
10 20 30 40 50 60
pF1KB5 MQRAAALVRRGCGPRTPSSWGRSQSSAAAEASAVLKVRPERSRRERILTLESMNPQVKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MQRAAALVRRGCGPRTPSSWGRSQSSAAAEASAVLKVRPERSRRERILTLESMNPQVKAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EYAVRGPIVLKAGEIELELQRGIKKPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EYAVRGPIVLKAGEIELELQRGIKKPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 IYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 WALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 VYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 PEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 EDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVP
430 440 450 460 470 480
490 500 510 520
pF1KB5 GSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFLEKYA
:::::::::::::::::::::::::::::::::::::::::::
CCDS10 GSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFLEKYA
490 500 510 520
>>CCDS45478.1 GPT2 gene_id:84706|Hs108|chr16 (423 aa)
initn: 2869 init1: 2869 opt: 2869 Z-score: 3571.2 bits: 670.1 E(32554): 1.3e-192
Smith-Waterman score: 2869; 100.0% identity (100.0% similar) in 423 aa overlap (101-523:1-423)
80 90 100 110 120 130
pF1KB5 KAGEIELELQRGIKKPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLDSPSFPED
::::::::::::::::::::::::::::::
CCDS45 MGQQPITFLRQVMALCTYPNLLDSPSFPED
10 20 30
140 150 160 170 180 190
pF1KB5 AKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDG
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB5 ISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRR
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB5 AVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPD
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB5 CRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKL
220 230 240 250 260 270
380 390 400 410 420 430
pF1KB5 LSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGI
280 290 300 310 320 330
440 450 460 470 480 490
pF1KB5 HCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 HCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGT
340 350 360 370 380 390
500 510 520
pF1KB5 YHFRMTILPPVEKLKTVLQKVKDFHINFLEKYA
:::::::::::::::::::::::::::::::::
CCDS45 YHFRMTILPPVEKLKTVLQKVKDFHINFLEKYA
400 410 420
>>CCDS6430.1 GPT gene_id:2875|Hs108|chr8 (496 aa)
initn: 2387 init1: 2350 opt: 2363 Z-score: 2939.9 bits: 553.5 E(32554): 2e-157
Smith-Waterman score: 2363; 69.0% identity (90.2% similar) in 480 aa overlap (44-523:17-496)
20 30 40 50 60 70
pF1KB5 PRTPSSWGRSQSSAAAEASAVLKVRPERSRRERILTLESMNPQVKAVEYAVRGPIVLKAG
: ..:::..:::.:. :::::::::: .:
CCDS64 MASSTGDRSQAVRHGLRAKVLTLDGMNPRVRRVEYAVRGPIVQRAL
10 20 30 40
80 90 100 110 120 130
pF1KB5 EIELELQRGIKKPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLDSPSFPEDAKK
:.: ::..:.::::::::::::::::::::.::::::::.:::. :.::.::.::.::::
CCDS64 ELEQELRQGVKKPFTEVIRANIGDAQAMGQRPITFLRQVLALCVNPDLLSSPNFPDDAKK
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB5 RARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGIST
::.::::::::.:::.::.:.:.. :::::: :: :::::.::::.:..:.:::::.: :
CCDS64 RAERILQACGGHSLGAYSVSSGIQLIREDVARYIERRDGGIPADPNNVFLSTGASDAIVT
110 120 130 140 150 160
200 210 220 230 240 250
pF1KB5 ILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQ
.::.::.: :..::::.:::::::::::...:: :.::.:::::: :::.: ::.::.
CCDS64 VLKLLVAGEGHTRTGVLIPIPQYPLYSATLAELGAVQVDYYLDEERAWALDVAELHRALG
170 180 190 200 210 220
260 270 280 290 300 310
pF1KB5 EAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRF
.:.::: :..::.:::::::::::.:.::: ::.::.::.::::::::::::::. .:
CCDS64 QARDHCRPRALCVINPGNPTGQVQTRECIEAVIRFAFEERLFLLADEVYQDNVYAAGSQF
230 240 250 260 270 280
320 330 340 350 360 370
pF1KB5 HSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSV
:::::::.:::: :... :::::::::::::::::.::::.::.:. .. :..::.::
CCDS64 HSFKKVLMEMGPPYAGQQELASFHSTSKGYMGECGFRGGYVEVVNMDAAVQQQMLKLMSV
290 300 310 320 330 340
380 390 400 410 420 430
pF1KB5 RLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCN
:::::: ::: .:.::.::. . :: ::. ::..::..:: ::::::..::..::: ::
CCDS64 RLCPPVPGQALLDLVVSPPAPTDPSFAQFQAEKQAVLAELAAKAKLTEQVFNEAPGISCN
350 360 370 380 390 400
440 450 460 470 480 490
pF1KB5 PLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHF
:.:::::.:::. .: .::: :: .:::::.:..::::::::::::::::::::::::
CCDS64 PVQGAMYSFPRVQLPPRAVERAQELGLAPDMFFCLRLLEETGICVVPGSGFGQREGTYHF
410 420 430 440 450 460
500 510 520
pF1KB5 RMTILPPVEKLKTVLQKVKDFHINFLEKYA
:::::::.:::. .:.:.. :: .: .:.
CCDS64 RMTILPPLEKLRLLLEKLSRFHAKFTLEYS
470 480 490
523 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:20:42 2016 done: Sat Nov 5 06:20:42 2016
Total Scan time: 3.360 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]