Result of FASTA (ccds) for pF1KB5166
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5166, 158 aa
  1>>>pF1KB5166 158 - 158 aa - 158 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4547+/-0.000735; mu= 6.6369+/- 0.044
 mean_var=105.5651+/-21.460, 0's: 0 Z-trim(111.7): 104  B-trim: 5 in 1/50
 Lambda= 0.124829
 statistics sampled from 12437 (12555) to 12437 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.386), width:  16
 Scan time:  1.720

The best scores are:                                      opt bits E(32554)
CCDS44567.1 LMO2 gene_id:4005|Hs108|chr11          ( 158) 1142 215.4 1.2e-56
CCDS7888.2 LMO2 gene_id:4005|Hs108|chr11           ( 227) 1142 215.5 1.6e-56
CCDS58118.1 LMO1 gene_id:4004|Hs108|chr11          ( 155)  578 113.8 4.3e-26
CCDS44534.1 LMO1 gene_id:4004|Hs108|chr11          ( 156)  578 113.8 4.4e-26
CCDS58211.1 LMO3 gene_id:55885|Hs108|chr12         ( 156)  567 111.8 1.7e-25
CCDS58212.1 LMO3 gene_id:55885|Hs108|chr12         ( 163)  567 111.9 1.8e-25
CCDS8678.1 LMO3 gene_id:55885|Hs108|chr12          ( 145)  565 111.5 2.1e-25
CCDS713.1 LMO4 gene_id:8543|Hs108|chr1             ( 165)  451 91.0 3.5e-19
CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1          ( 388)  348 72.7 2.7e-13
CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1           ( 390)  348 72.7 2.7e-13
CCDS1393.1 LHX9 gene_id:56956|Hs108|chr1           ( 397)  348 72.7 2.7e-13
CCDS6853.1 LHX2 gene_id:9355|Hs108|chr9            ( 406)  348 72.7 2.8e-13
CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9            ( 397)  342 71.6 5.8e-13
CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9            ( 402)  341 71.4 6.6e-13
CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15         ( 359)  335 70.3 1.3e-12
CCDS11316.1 LHX1 gene_id:3975|Hs108|chr17          ( 406)  330 69.4 2.6e-12
CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5           ( 349)  324 68.3 4.9e-12
CCDS58008.1 LHX8 gene_id:431707|Hs108|chr1         ( 346)  320 67.6 8.1e-12
CCDS30756.1 LHX8 gene_id:431707|Hs108|chr1         ( 356)  320 67.6 8.2e-12
CCDS6866.2 LMX1B gene_id:4010|Hs108|chr9           ( 395)  319 67.4   1e-11
CCDS55342.1 LMX1B gene_id:4010|Hs108|chr9          ( 402)  319 67.4   1e-11
CCDS55343.1 LMX1B gene_id:4010|Hs108|chr9          ( 406)  319 67.4   1e-11
CCDS9171.1 LHX5 gene_id:64211|Hs108|chr12          ( 402)  313 66.4 2.2e-11
CCDS1247.1 LMX1A gene_id:4009|Hs108|chr1           ( 382)  308 65.4 3.9e-11


>>CCDS44567.1 LMO2 gene_id:4005|Hs108|chr11               (158 aa)
 initn: 1142 init1: 1142 opt: 1142  Z-score: 1130.7  bits: 215.4 E(32554): 1.2e-56
Smith-Waterman score: 1142; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KB5 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF
               70        80        90       100       110       120

              130       140       150        
pF1KB5 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
       ::::::::::::::::::::::::::::::::::::::
CCDS44 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
              130       140       150        

>>CCDS7888.2 LMO2 gene_id:4005|Hs108|chr11                (227 aa)
 initn: 1142 init1: 1142 opt: 1142  Z-score: 1128.4  bits: 215.5 E(32554): 1.6e-56
Smith-Waterman score: 1142; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:70-227)

                                             10        20        30
pF1KB5                               MSSAIERKSLDPSEEPVDEVLQIPPSLLTC
                                     ::::::::::::::::::::::::::::::
CCDS78 APEGVRAPAAGQPRATKGAPPPPGTPPPSPMSSAIERKSLDPSEEPVDEVLQIPPSLLTC
      40        50        60        70        80        90         

               40        50        60        70        80        90
pF1KB5 GGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ
     100       110       120       130       140       150         

              100       110       120       130       140       150
pF1KB5 DGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE
     160       170       180       190       200       210         

               
pF1KB5 WTKINGMI
       ::::::::
CCDS78 WTKINGMI
     220       

>>CCDS58118.1 LMO1 gene_id:4004|Hs108|chr11               (155 aa)
 initn: 653 init1: 565 opt: 578  Z-score: 581.8  bits: 113.8 E(32554): 4.3e-26
Smith-Waterman score: 578; 59.1% identity (81.9% similar) in 127 aa overlap (30-156:23-148)

               10        20        30        40        50        60
pF1KB5 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC
                                    :.::...: :::.:::.:.:::::::.:  :
CCDS58        MVLDQEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACC
                      10        20        30        40        50   

               70        80        90       100       110       120
pF1KB5 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF
        :::::::  :: : .  :::::::::::  : ::.:.: : :.::.::..:.::::.::
CCDS58 DCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCF
            60        70        80        90       100       110   

              130       140       150             
pF1KB5 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI     
        :  :...:::::...: :. :.:..: ::  ..::       
CCDS58 ACQLCNQRFCVGDKFFLKNNMILCQMD-YEEGQLNGTFESQVQ
           120       130       140        150     

>>CCDS44534.1 LMO1 gene_id:4004|Hs108|chr11               (156 aa)
 initn: 653 init1: 565 opt: 578  Z-score: 581.8  bits: 113.8 E(32554): 4.4e-26
Smith-Waterman score: 578; 59.1% identity (81.9% similar) in 127 aa overlap (30-156:24-149)

               10        20        30        40        50        60
pF1KB5 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC
                                    :.::...: :::.:::.:.:::::::.:  :
CCDS44       MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACC
                     10        20        30        40        50    

               70        80        90       100       110       120
pF1KB5 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF
        :::::::  :: : .  :::::::::::  : ::.:.: : :.::.::..:.::::.::
CCDS44 DCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCF
           60        70        80        90       100       110    

              130       140       150             
pF1KB5 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI     
        :  :...:::::...: :. :.:..: ::  ..::       
CCDS44 ACQLCNQRFCVGDKFFLKNNMILCQMD-YEEGQLNGTFESQVQ
          120       130       140        150      

>>CCDS58211.1 LMO3 gene_id:55885|Hs108|chr12              (156 aa)
 initn: 640 init1: 552 opt: 567  Z-score: 571.1  bits: 111.8 E(32554): 1.7e-25
Smith-Waterman score: 567; 56.0% identity (78.4% similar) in 134 aa overlap (19-150:11-144)

               10        20          30        40        50        
pF1KB5 MSSAIERKSLDPSEEPVDEVLQIPPSLLT--CGGCQQNIGDRYFLKAIDQYWHEDCLSCD
                         ..:.. :.     :.::...: :::.:::.:.:::::::.: 
CCDS58         MQKKEKSFGIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCA
                       10        20        30        40        50  

       60        70        80        90       100       110        
pF1KB5 LCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLE
        : :::::::  :: : .  :::::::::::  : ::.:.: : :.::.::.::.::::.
CCDS58 CCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLD
             60        70        80        90       100       110  

      120       130       140       150            
pF1KB5 CFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI    
       :: :  :...:::::...: :. :.:. :  :            
CCDS58 CFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
            120       130       140       150      

>>CCDS58212.1 LMO3 gene_id:55885|Hs108|chr12              (163 aa)
 initn: 640 init1: 552 opt: 567  Z-score: 570.8  bits: 111.9 E(32554): 1.8e-25
Smith-Waterman score: 567; 56.0% identity (78.4% similar) in 134 aa overlap (19-150:18-151)

               10        20          30        40        50        
pF1KB5 MSSAIERKSLDPSEEPVDEVLQIPPSLLT--CGGCQQNIGDRYFLKAIDQYWHEDCLSCD
                         ..:.. :.     :.::...: :::.:::.:.:::::::.: 
CCDS58  MLMEGGRAAAARNVSSIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCA
                10        20        30        40        50         

       60        70        80        90       100       110        
pF1KB5 LCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLE
        : :::::::  :: : .  :::::::::::  : ::.:.: : :.::.::.::.::::.
CCDS58 CCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLD
      60        70        80        90       100       110         

      120       130       140       150            
pF1KB5 CFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI    
       :: :  :...:::::...: :. :.:. :  :            
CCDS58 CFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
     120       130       140       150       160   

>>CCDS8678.1 LMO3 gene_id:55885|Hs108|chr12               (145 aa)
 initn: 640 init1: 552 opt: 565  Z-score: 569.6  bits: 111.5 E(32554): 2.1e-25
Smith-Waterman score: 565; 60.3% identity (81.0% similar) in 121 aa overlap (30-150:13-133)

               10        20        30        40        50        60
pF1KB5 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC
                                    :.::...: :::.:::.:.:::::::.:  :
CCDS86                  MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACC
                                10        20        30        40   

               70        80        90       100       110       120
pF1KB5 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF
        :::::::  :: : .  :::::::::::  : ::.:.: : :.::.::.::.::::.::
CCDS86 DCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCF
            50        60        70        80        90       100   

              130       140       150            
pF1KB5 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI    
        :  :...:::::...: :. :.:. :  :            
CCDS86 ACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
           110       120       130       140     

>>CCDS713.1 LMO4 gene_id:8543|Hs108|chr1                  (165 aa)
 initn: 492 init1: 436 opt: 451  Z-score: 457.8  bits: 91.0 E(32554): 3.5e-19
Smith-Waterman score: 451; 43.4% identity (69.2% similar) in 143 aa overlap (22-158:9-150)

               10        20              30        40        50    
pF1KB5 MSSAIERKSLDPSEEPVDEVLQIPP------SLLTCGGCQQNIGDRYFLKAIDQYWHEDC
                            : ::      :   :.::  .:.::..: :.:.:::  :
CCDS71              MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRC
                            10        20        30        40       

           60        70        80        90       100       110    
pF1KB5 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKV
       :.:. :  .::..:   : : :  ::: ::.::::..: :..: . : : :..::.. .:
CCDS71 LKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNV
        50        60        70        80        90       100       

          120       130       140       150                       
pF1KB5 YHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI               
       :::.:: :..:....  :::.  ::... ::.:    . ::: .               
CCDS71 YHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD-RPTALINGHLNSLQSNPLLPDQKVC
       110       120       130       140        150       160     

>>CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1               (388 aa)
 initn: 347 init1: 181 opt: 348  Z-score: 352.2  bits: 72.7 E(32554): 2.7e-13
Smith-Waterman score: 348; 42.1% identity (66.1% similar) in 121 aa overlap (25-144:59-174)

                     10        20        30        40        50    
pF1KB5       MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDC
                                     :.:  :.::  .:.:::.: :.:. ::  :
CCDS30 ERRSKTEARLAKGAQLNGRDAGMPPLSPEKPAL--CAGCGGKISDRYYLLAVDKQWHLRC
       30        40        50        60          70        80      

           60         70        80        90       100       110   
pF1KB5 LSCDLCGCRLG-EVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDK
       :.:  : :.:. :     . : :   :..:: : :. .  :: :   : : ::.::..:.
CCDS30 LKC--CECKLALESELTCFAKDGSIYCKEDYYRRFSVQR-CARCHLGISASEMVMRARDS
           90       100       110       120        130       140   

           120       130       140       150                       
pF1KB5 VYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI               
       :::: :: :..:.: . .::.. . .: . :                             
CCDS30 VYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLA
           150       160       170       180       190       200   

CCDS30 LPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRT
           210       220       230       240       250       260   

>>CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1                (390 aa)
 initn: 286 init1: 124 opt: 348  Z-score: 352.2  bits: 72.7 E(32554): 2.7e-13
Smith-Waterman score: 348; 34.2% identity (68.5% similar) in 149 aa overlap (12-155:8-150)

               10           20         30        40        50      
pF1KB5 MSSAIERKSLDPSEEPVD---EVLQIPPSLLT-CGGCQQNIGDRYFLKAIDQYWHEDCLS
                  :.:  :    :.: .: . .  :.::.:.: :...::..:..:: .::.
CCDS13     MMQSATVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLK
                   10        20        30        40        50      

         60        70        80        90       100       110      
pF1KB5 CDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYH
       :  :  .:..   : . . :   :..:... ::    :..:.. :   ... ...: :::
CCDS13 CADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQVVRKAQDFVYH
         60           70        80          90       100       110 

        120       130        140       150                         
pF1KB5 LECFKCAACQKHFCVGDR-YLLINSDIVCEQDIYEWTKINGMI                 
       :.:: :  :.... .::. ::. .. .::..: :: .: :                    
CCDS13 LHCFACIICNRQLATGDEFYLMEDGRLVCKED-YETAKQNDDSEAGAKRPRTTITAKQLE
             120       130       140        150       160       170

CCDS13 TLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKS
              180       190       200       210       220       230




158 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:22:22 2016 done: Fri Nov  4 03:22:22 2016
 Total Scan time:  1.720 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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