Result of FASTA (ccds) for
pF1KB5167
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5167, 520 aa
1>>>pF1KB5167 520 - 520 aa - 520 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8366+/-0.000626; mu= 17.6078+/- 0.038
mean_var=93.1371+/-18.533, 0's: 0 Z-trim(114.1): 21 B-trim: 736 in 1/49
Lambda= 0.132896
statistics sampled from 14662 (14683) to 14662 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.451), width: 16
Scan time: 2.730
The best scores are: opt bits E(32554)
CCDS10963.1 KLHDC4 gene_id:54758|Hs108|chr16 ( 520) 3592 698.3 5.3e-201
CCDS54050.1 KLHDC4 gene_id:54758|Hs108|chr16 ( 463) 3005 585.8 3.7e-167
CCDS54051.1 KLHDC4 gene_id:54758|Hs108|chr16 ( 489) 2220 435.3 7.7e-122
>>CCDS10963.1 KLHDC4 gene_id:54758|Hs108|chr16 (520 aa)
initn: 3592 init1: 3592 opt: 3592 Z-score: 3722.1 bits: 698.3 E(32554): 5.3e-201
Smith-Waterman score: 3592; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)
10 20 30 40 50 60
pF1KB5 MGKKGKKEKKGRGAEKTAAKMEKKVSKRSRKEEEDLEALIAHFQTLDAKRTQTVELPCPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGKKGKKEKKGRGAEKTAAKMEKKVSKRSRKEEEDLEALIAHFQTLDAKRTQTVELPCPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 PSPRLNASLSVHPEKDELILFGGEYFNGQKTFLYNELYVYNTRKDTWTKVDIPSPPPRRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PSPRLNASLSVHPEKDELILFGGEYFNGQKTFLYNELYVYNTRKDTWTKVDIPSPPPRRC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 AHQAVVVPQGGGQLWVFGGEFASPNGEQFYHYKDLWVLHLATKTWEQVKSTGGPSGRSGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AHQAVVVPQGGGQLWVFGGEFASPNGEQFYHYKDLWVLHLATKTWEQVKSTGGPSGRSGH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 RMVAWKRQLILFGGFHESTRDYIYYNDVYAFNLDTFTWSKLSPSGTGPTPRSGCQMSVTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RMVAWKRQLILFGGFHESTRDYIYYNDVYAFNLDTFTWSKLSPSGTGPTPRSGCQMSVTP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 VAMAPNHQTLFFGGVCDEEEEESLSGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VAMAPNHQTLFFGGVCDEEEEESLSGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 RKEEPEGGSRPACGGAGTQGPVQLVKEVVAEDGTVVTIKQVLTAPGSAGQPRSEDEDSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RKEEPEGGSRPACGGAGTQGPVQLVKEVVAEDGTVVTIKQVLTAPGSAGQPRSEDEDSLE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 EAGSPAPGPCPRSNAMLAVKHGVLYVYGGMFEAGDRQVTLSDLHCLDLHRMEAWKALVEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EAGSPAPGPCPRSNAMLAVKHGVLYVYGGMFEAGDRQVTLSDLHCLDLHRMEAWKALVEM
430 440 450 460 470 480
490 500 510 520
pF1KB5 DPETQEWLEETDSEEDSEEVEGAEGGVDDEDSGEESGAED
::::::::::::::::::::::::::::::::::::::::
CCDS10 DPETQEWLEETDSEEDSEEVEGAEGGVDDEDSGEESGAED
490 500 510 520
>>CCDS54050.1 KLHDC4 gene_id:54758|Hs108|chr16 (463 aa)
initn: 3005 init1: 3005 opt: 3005 Z-score: 3114.6 bits: 585.8 E(32554): 3.7e-167
Smith-Waterman score: 3082; 89.0% identity (89.0% similar) in 520 aa overlap (1-520:1-463)
10 20 30 40 50 60
pF1KB5 MGKKGKKEKKGRGAEKTAAKMEKKVSKRSRKEEEDLEALIAHFQTLDAKRTQTVELPCPP
:::::::::::::::::::::::::::::::::
CCDS54 MGKKGKKEKKGRGAEKTAAKMEKKVSKRSRKEE---------------------------
10 20 30
70 80 90 100 110 120
pF1KB5 PSPRLNASLSVHPEKDELILFGGEYFNGQKTFLYNELYVYNTRKDTWTKVDIPSPPPRRC
::::::::::::::::::::::::::::::
CCDS54 ------------------------------TFLYNELYVYNTRKDTWTKVDIPSPPPRRC
40 50 60
130 140 150 160 170 180
pF1KB5 AHQAVVVPQGGGQLWVFGGEFASPNGEQFYHYKDLWVLHLATKTWEQVKSTGGPSGRSGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AHQAVVVPQGGGQLWVFGGEFASPNGEQFYHYKDLWVLHLATKTWEQVKSTGGPSGRSGH
70 80 90 100 110 120
190 200 210 220 230 240
pF1KB5 RMVAWKRQLILFGGFHESTRDYIYYNDVYAFNLDTFTWSKLSPSGTGPTPRSGCQMSVTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RMVAWKRQLILFGGFHESTRDYIYYNDVYAFNLDTFTWSKLSPSGTGPTPRSGCQMSVTP
130 140 150 160 170 180
250 260 270 280 290 300
pF1KB5 QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFS
190 200 210 220 230 240
310 320 330 340 350 360
pF1KB5 VAMAPNHQTLFFGGVCDEEEEESLSGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VAMAPNHQTLFFGGVCDEEEEESLSGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRG
250 260 270 280 290 300
370 380 390 400 410 420
pF1KB5 RKEEPEGGSRPACGGAGTQGPVQLVKEVVAEDGTVVTIKQVLTAPGSAGQPRSEDEDSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RKEEPEGGSRPACGGAGTQGPVQLVKEVVAEDGTVVTIKQVLTAPGSAGQPRSEDEDSLE
310 320 330 340 350 360
430 440 450 460 470 480
pF1KB5 EAGSPAPGPCPRSNAMLAVKHGVLYVYGGMFEAGDRQVTLSDLHCLDLHRMEAWKALVEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EAGSPAPGPCPRSNAMLAVKHGVLYVYGGMFEAGDRQVTLSDLHCLDLHRMEAWKALVEM
370 380 390 400 410 420
490 500 510 520
pF1KB5 DPETQEWLEETDSEEDSEEVEGAEGGVDDEDSGEESGAED
::::::::::::::::::::::::::::::::::::::::
CCDS54 DPETQEWLEETDSEEDSEEVEGAEGGVDDEDSGEESGAED
430 440 450 460
>>CCDS54051.1 KLHDC4 gene_id:54758|Hs108|chr16 (489 aa)
initn: 2220 init1: 2220 opt: 2220 Z-score: 2300.9 bits: 435.3 E(32554): 7.7e-122
Smith-Waterman score: 3302; 94.0% identity (94.0% similar) in 520 aa overlap (1-520:1-489)
10 20 30 40 50 60
pF1KB5 MGKKGKKEKKGRGAEKTAAKMEKKVSKRSRKEEEDLEALIAHFQTLDAKRTQTVELPCPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MGKKGKKEKKGRGAEKTAAKMEKKVSKRSRKEEEDLEALIAHFQTLDAKRTQTVELPCPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 PSPRLNASLSVHPEKDELILFGGEYFNGQKTFLYNELYVYNTRKDTWTKVDIPSPPPRRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PSPRLNASLSVHPEKDELILFGGEYFNGQKTFLYNELYVYNTRKDTWTKVDIPSPPPRRC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 AHQAVVVPQGGGQLWVFGGEFASPNGEQFYHYKDLWVLHLATKTWEQVKSTGGPSGRSGH
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AHQAVVVPQGGGQLWVFGGEFASPNGEQFYHYKDLWVLHLATKTWEQVK-----------
130 140 150 160
190 200 210 220 230 240
pF1KB5 RMVAWKRQLILFGGFHESTRDYIYYNDVYAFNLDTFTWSKLSPSGTGPTPRSGCQMSVTP
::::::::::::::::::::::::::::::::::::::::
CCDS54 --------------------DYIYYNDVYAFNLDTFTWSKLSPSGTGPTPRSGCQMSVTP
170 180 190 200
250 260 270 280 290 300
pF1KB5 QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFS
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB5 VAMAPNHQTLFFGGVCDEEEEESLSGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VAMAPNHQTLFFGGVCDEEEEESLSGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRG
270 280 290 300 310 320
370 380 390 400 410 420
pF1KB5 RKEEPEGGSRPACGGAGTQGPVQLVKEVVAEDGTVVTIKQVLTAPGSAGQPRSEDEDSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RKEEPEGGSRPACGGAGTQGPVQLVKEVVAEDGTVVTIKQVLTAPGSAGQPRSEDEDSLE
330 340 350 360 370 380
430 440 450 460 470 480
pF1KB5 EAGSPAPGPCPRSNAMLAVKHGVLYVYGGMFEAGDRQVTLSDLHCLDLHRMEAWKALVEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EAGSPAPGPCPRSNAMLAVKHGVLYVYGGMFEAGDRQVTLSDLHCLDLHRMEAWKALVEM
390 400 410 420 430 440
490 500 510 520
pF1KB5 DPETQEWLEETDSEEDSEEVEGAEGGVDDEDSGEESGAED
::::::::::::::::::::::::::::::::::::::::
CCDS54 DPETQEWLEETDSEEDSEEVEGAEGGVDDEDSGEESGAED
450 460 470 480
520 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:22:37 2016 done: Sat Nov 5 06:22:37 2016
Total Scan time: 2.730 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]