Result of FASTA (ccds) for
pF1KB5177
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5177, 217 aa
1>>>pF1KB5177 217 - 217 aa - 217 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5259+/-0.000808; mu= 13.0983+/- 0.049
mean_var=74.0292+/-14.855, 0's: 0 Z-trim(108.7): 46 B-trim: 226 in 1/50
Lambda= 0.149064
statistics sampled from 10323 (10369) to 10323 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.319), width: 16
Scan time: 1.810
The best scores are: opt bits E(32554)
CCDS2218.1 GCA gene_id:25801|Hs108|chr2 ( 217) 1477 326.4 8.3e-90
CCDS82527.1 GCA gene_id:25801|Hs108|chr2 ( 198) 1336 296.1 1e-80
CCDS5612.1 SRI gene_id:6717|Hs108|chr7 ( 198) 807 182.3 1.8e-46
CCDS47638.1 SRI gene_id:6717|Hs108|chr7 ( 183) 800 180.8 4.9e-46
CCDS59063.1 SRI gene_id:6717|Hs108|chr7 ( 180) 774 175.2 2.3e-44
CCDS345.1 PEF1 gene_id:553115|Hs108|chr1 ( 284) 397 94.2 8.6e-20
CCDS3854.1 PDCD6 gene_id:10016|Hs108|chr5 ( 191) 364 87.0 8.5e-18
CCDS58940.1 PDCD6 gene_id:10016|Hs108|chr5 ( 189) 355 85.1 3.2e-17
CCDS45246.1 CAPN3 gene_id:825|Hs108|chr15 ( 309) 350 84.2 1e-16
CCDS12489.1 CAPNS1 gene_id:826|Hs108|chr19 ( 268) 348 83.7 1.2e-16
CCDS10085.1 CAPN3 gene_id:825|Hs108|chr15 ( 729) 350 84.4 2.1e-16
CCDS32207.1 CAPN3 gene_id:825|Hs108|chr15 ( 815) 350 84.4 2.3e-16
CCDS45245.1 CAPN3 gene_id:825|Hs108|chr15 ( 821) 350 84.4 2.3e-16
CCDS54010.1 CAPNS2 gene_id:84290|Hs108|chr16 ( 248) 343 82.6 2.4e-16
CCDS47436.1 CAPN11 gene_id:11131|Hs108|chr6 ( 739) 347 83.7 3.3e-16
CCDS73038.1 CAPN8 gene_id:388743|Hs108|chr1 ( 703) 325 79.0 8.3e-15
CCDS53478.1 CAPN2 gene_id:824|Hs108|chr1 ( 622) 324 78.7 8.7e-15
CCDS31035.1 CAPN2 gene_id:824|Hs108|chr1 ( 700) 324 78.8 9.6e-15
CCDS81431.1 CAPN9 gene_id:10753|Hs108|chr1 ( 627) 315 76.8 3.3e-14
CCDS31053.1 CAPN9 gene_id:10753|Hs108|chr1 ( 664) 315 76.8 3.5e-14
CCDS1586.1 CAPN9 gene_id:10753|Hs108|chr1 ( 690) 315 76.8 3.6e-14
CCDS10086.1 CAPN3 gene_id:825|Hs108|chr15 ( 156) 305 74.3 4.7e-14
CCDS44644.1 CAPN1 gene_id:823|Hs108|chr11 ( 714) 310 75.8 7.9e-14
CCDS75223.1 PDCD6 gene_id:10016|Hs108|chr5 ( 121) 298 72.7 1.1e-13
>>CCDS2218.1 GCA gene_id:25801|Hs108|chr2 (217 aa)
initn: 1477 init1: 1477 opt: 1477 Z-score: 1725.8 bits: 326.4 E(32554): 8.3e-90
Smith-Waterman score: 1477; 99.5% identity (100.0% similar) in 217 aa overlap (1-217:1-217)
10 20 30 40 50 60
pF1KB5 MAYPGYGGGFGNFSIQVPGMQMGQPVPETGPAILLDGYSGPAYSDTYSSAGDSVYTYFSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MAYPGYGGGFGNFSIQVPGMQMGQPVPETGPAILLDGYSGPAYSDTYSSAGDSVYTYFSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 VAGQDGEVDAEELQRCLTQAGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAA
:::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS22 VAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVA
130 140 150 160 170 180
190 200 210
pF1KB5 CCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMAI
:::::::::::::::::::::::::::::::::::::
CCDS22 CCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMAI
190 200 210
>>CCDS82527.1 GCA gene_id:25801|Hs108|chr2 (198 aa)
initn: 1336 init1: 1336 opt: 1336 Z-score: 1562.5 bits: 296.1 E(32554): 1e-80
Smith-Waterman score: 1336; 99.5% identity (100.0% similar) in 198 aa overlap (20-217:1-198)
10 20 30 40 50 60
pF1KB5 MAYPGYGGGFGNFSIQVPGMQMGQPVPETGPAILLDGYSGPAYSDTYSSAGDSVYTYFSA
:::::::::::::::::::::::::::::::::::::::::
CCDS82 MQMGQPVPETGPAILLDGYSGPAYSDTYSSAGDSVYTYFSA
10 20 30 40
70 80 90 100 110 120
pF1KB5 VAGQDGEVDAEELQRCLTQAGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAA
:::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS82 VAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAA
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVA
110 120 130 140 150 160
190 200 210
pF1KB5 CCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMAI
:::::::::::::::::::::::::::::::::::::
CCDS82 CCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMAI
170 180 190
>>CCDS5612.1 SRI gene_id:6717|Hs108|chr7 (198 aa)
initn: 857 init1: 778 opt: 807 Z-score: 947.7 bits: 182.3 E(32554): 1.8e-46
Smith-Waterman score: 829; 55.8% identity (77.4% similar) in 217 aa overlap (1-217:1-198)
10 20 30 40 50 60
pF1KB5 MAYPGYGGGFGNFSIQVPGMQMGQPVPETGPAILLDGYSGPAYSDTYSSAGDSVYTYFSA
:::::. :. :.. :: : : .:::. ... : .: ::.:
CCDS56 MAYPGHPGAGGGY---YPGGYGGAP-------------GGPAFP---GQTQDPLYGYFAA
10 20 30 40
70 80 90 100 110 120
pF1KB5 VAGQDGEVDAEELQRCLTQAGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAA
::::::..::.::::::::.:: : :.::.:::::.:..::::: .: :::: ::::::.
CCDS56 VAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAV
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVA
::.:...:.. : : ::::. .::..:. ::.:::::....:.:::: ::.: ::::.:
CCDS56 LNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIA
110 120 130 140 150 160
190 200 210
pF1KB5 CCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMAI
:::::::::: ::.:: ::: .:: ::::.: .:..
CCDS56 CCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV
170 180 190
>>CCDS47638.1 SRI gene_id:6717|Hs108|chr7 (183 aa)
initn: 814 init1: 778 opt: 800 Z-score: 940.0 bits: 180.8 E(32554): 4.9e-46
Smith-Waterman score: 800; 61.8% identity (85.4% similar) in 178 aa overlap (40-217:9-183)
10 20 30 40 50 60
pF1KB5 FGNFSIQVPGMQMGQPVPETGPAILLDGYSGPAYSDTYSSAGDSVYTYFSAVAGQDGEVD
:::. ... : .: ::.:::::::..:
CCDS47 MQYGGAPGGPAFP---GQTQDPLYGYFAAVAGQDGQID
10 20 30
70 80 90 100 110 120
pF1KB5 AEELQRCLTQAGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFM
:.::::::::.:: : :.::.:::::.:..::::: .: :::: ::::::.::.:...:.
CCDS47 ADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFI
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB5 TVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVACCVKLRALT
. : : ::::. .::..:. ::.:::::....:.:::: ::.: ::::.::::::::::
CCDS47 SFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALT
100 110 120 130 140 150
190 200 210
pF1KB5 DFFRKRDHLQQGSANFIYDDFLQGTMAI
: ::.:: ::: .:: ::::.: .:..
CCDS47 DSFRRRDTAQQGVVNFPYDDFIQCVMSV
160 170 180
>>CCDS59063.1 SRI gene_id:6717|Hs108|chr7 (180 aa)
initn: 766 init1: 766 opt: 774 Z-score: 909.9 bits: 175.2 E(32554): 2.3e-44
Smith-Waterman score: 774; 62.9% identity (85.3% similar) in 170 aa overlap (40-209:9-175)
10 20 30 40 50 60
pF1KB5 FGNFSIQVPGMQMGQPVPETGPAILLDGYSGPAYSDTYSSAGDSVYTYFSAVAGQDGEVD
:::. ... : .: ::.:::::::..:
CCDS59 MQYGGAPGGPAFP---GQTQDPLYGYFAAVAGQDGQID
10 20 30
70 80 90 100 110 120
pF1KB5 AEELQRCLTQAGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFM
:.::::::::.:: : :.::.:::::.:..::::: .: :::: ::::::.::.:...:.
CCDS59 ADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFI
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB5 TVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVACCVKLRALT
. : : ::::. .::..:. ::.:::::....:.:::: ::.: ::::.::::::::::
CCDS59 SFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALT
100 110 120 130 140 150
190 200 210
pF1KB5 DFFRKRDHLQQGSANFIYDDFLQGTMAI
: ::.:: ::: .:: :::
CCDS59 DSFRRRDTAQQGVVNFPYDDVSLRN
160 170 180
>>CCDS345.1 PEF1 gene_id:553115|Hs108|chr1 (284 aa)
initn: 368 init1: 263 opt: 397 Z-score: 468.8 bits: 94.2 E(32554): 8.6e-20
Smith-Waterman score: 398; 34.0% identity (61.9% similar) in 215 aa overlap (7-214:78-279)
10 20 30
pF1KB5 MAYPGYGGGFGNFSIQVPGMQMGQPVPETGPAIL--
:: .:. .:: .::: : . :
CCDS34 GPAPGGPYGPPAGGGPYGHPNPGMFPSGTPGGPYGG---AAPGGPYGQPPPSSYGAQQPG
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB5 LDGYSG-PAYSDTYSSAGDSVYTYFSAV-AGQDGEVDAEELQRCLTQAGINGTYSPFSLE
: : .: : : .:..:..: . ..: .. .::. :: .: ..: :. :
CCDS34 LYGQGGAPPNVD------PEAYSWFQSVDSDHSGYISMKELK----QALVNCNWSSFNDE
110 120 130 140 150
100 110 120 130 140 150
pF1KB5 TCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMG
:: .:: :.:. ..:.. .:. :: .. ::. :. :.: ::.. . ::.::.. ::
CCDS34 TCLMMINMFDKTKSGRIDVYGFSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQMG
160 170 180 190 200 210
160 170 180 190 200
pF1KB5 YRLSPQTLTTIVKRY---SKNGRIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYDD
: :::: .:.:: : : . .: .. :..:..::. ::..: ::. . ..:
CCDS34 YNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFED
220 230 240 250 260 270
210
pF1KB5 FLQGTMAI
:. :
CCDS34 FVTMTASRML
280
>>CCDS3854.1 PDCD6 gene_id:10016|Hs108|chr5 (191 aa)
initn: 335 init1: 260 opt: 364 Z-score: 433.0 bits: 87.0 E(32554): 8.5e-18
Smith-Waterman score: 370; 32.5% identity (66.0% similar) in 197 aa overlap (24-217:7-190)
10 20 30 40 50 60
pF1KB5 MAYPGYGGGFGNFSIQVPGMQMGQPVPETGPAILLDGYSGPAYSDTYSSAGDSVYTYFSA
.: : .:: ::: . . . . ... :.
CCDS38 MAAYSYRPGPGAGP--------GPAAGAALPDQS-FLWNVFQR
10 20 30
70 80 90 100 110
pF1KB5 V-AGQDGEVDAEELQRCLTQAGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWA
: ..: .. :::. :. :::..::. : : .:.:.::.. . ..:. : .:
CCDS38 VDKDRSGVISDTELQQALS----NGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWK
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB5 ALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGR--IFFDD
.. :.. : : :.:.:: ....::.::.. .::::: : ........:: : :::
CCDS38 YITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDD
100 110 120 130 140 150
180 190 200 210
pF1KB5 YVACCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMAI
.. :. :. :::.::. : :.: . :...:. ...:
CCDS38 FIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV
160 170 180 190
>>CCDS58940.1 PDCD6 gene_id:10016|Hs108|chr5 (189 aa)
initn: 367 init1: 260 opt: 355 Z-score: 422.6 bits: 85.1 E(32554): 3.2e-17
Smith-Waterman score: 361; 33.0% identity (65.0% similar) in 197 aa overlap (24-217:7-188)
10 20 30 40 50 60
pF1KB5 MAYPGYGGGFGNFSIQVPGMQMGQPVPETGPAILLDGYSGPAYSDTYSSAGDSVYTYFSA
.: : .:: ::: . . . . ... :.
CCDS58 MAAYSYRPGPGAGP--------GPAAGAALPDQS-FLWNVFQR
10 20 30
70 80 90 100 110
pF1KB5 V-AGQDGEVDAEELQRCLTQAGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWA
: ..: .. :::. :. :::..::. : : .:.:.::.. . ..:. : .:
CCDS58 VDKDRSGVISDTELQQALS----NGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWK
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB5 ALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGR--IFFDD
.. :.. : : :.:.:: ....::.:: : ::::: : ........:: : :::
CCDS58 YITDWQNVFRTYDRDNSGMIDKNELKQA--LSGYRLSDQFHDILIRKFDRQGRGQIAFDD
100 110 120 130 140
180 190 200 210
pF1KB5 YVACCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMAI
.. :. :. :::.::. : :.: . :...:. ...:
CCDS58 FIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV
150 160 170 180
>>CCDS45246.1 CAPN3 gene_id:825|Hs108|chr15 (309 aa)
initn: 308 init1: 252 opt: 350 Z-score: 413.7 bits: 84.2 E(32554): 1e-16
Smith-Waterman score: 350; 33.3% identity (65.0% similar) in 180 aa overlap (41-215:129-307)
20 30 40 50 60 70
pF1KB5 GNFSIQVPGMQMGQPVPETGPAILLDGYSGPAYSDTYSSAGDSVYTYFSAVAGQDGEVDA
:. :: : .. . :. .::.: :. :
CCDS45 SNKELGVDQESEEGKGKTSPDKQKQSPQPQPGSSDQESEEQQQFRNIFKQIAGDDMEICA
100 110 120 130 140 150
80 90 100 110 120
pF1KB5 EELQRCLTQAGINGTYS----PFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKE
.::.. :. . .: . :.::.:: :::..: : .::.... :..:: ..::..
CCDS45 DELKKVLNTV-VNKHKDLKTHGFTLESCRSMIALMDTDGSGKLNLQEFHHLWNKIKAWQK
160 170 180 190 200 210
130 140 150 160 170 180
pF1KB5 NFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYS-KNGRIFFDDYVACCVKL
: : : :::.. .:.:.:.. :..:. : :. ::. :. : ::... : :.:
CCDS45 IFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITMRYADKHMNIDFDSFICCFVRL
220 230 240 250 260 270
190 200 210
pF1KB5 RALTDFFRKRDHLQQGSANFIYDDFLQGTMAI
... :. :. .: .. ..:: ::
CCDS45 EGMFRAFHAFDKDGDGIIKLNVLEWLQLTMYA
280 290 300
>>CCDS12489.1 CAPNS1 gene_id:826|Hs108|chr19 (268 aa)
initn: 295 init1: 228 opt: 348 Z-score: 412.3 bits: 83.7 E(32554): 1.2e-16
Smith-Waterman score: 350; 30.8% identity (59.7% similar) in 221 aa overlap (5-215:49-266)
10 20 30
pF1KB5 MAYPGYGGGFGNFSIQVPGMQMGQPVPETGPAIL
: ::: :. .... : .. . :. :
CCDS12 GGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMRILGGVISA-ISEA--AAQ
20 30 40 50 60 70
40 50 60 70 80
pF1KB5 LDGYSGPA---YSDTYSSAGDSVYTY---FSAVAGQDGEVDAEELQRCLTQAGI---NGT
. : ::. .. .. : . :. .::.: ::.: ::. :... .
CCDS12 YNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLK
80 90 100 110 120 130
90 100 110 120 130 140
pF1KB5 YSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELR
. :...::: :.:..: : :::.::. :: :: .. :. . : : :::. ::
CCDS12 TDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELP
140 150 160 170 180 190
150 160 170 180 190 200
pF1KB5 QAIGLMGYRLSPQTLTTIVKRYS-KNGRIFFDDYVACCVKLRALTDFFRKRDHLQQGSAN
:. :..:. . . :..::: ..: . ::....: :.: :. :.. :. :. .
CCDS12 GAFEAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQ
200 210 220 230 240 250
210
pF1KB5 FIYDDFLQGTMAI
...:: ::
CCDS12 VNIQEWLQLTMYS
260
217 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:23:14 2016 done: Sat Nov 5 06:23:15 2016
Total Scan time: 1.810 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]