FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5179, 395 aa
  1>>>pF1KB5179 395 - 395 aa - 395 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4392+/-0.000944; mu= 16.2257+/- 0.057
 mean_var=65.7744+/-13.314, 0's: 0 Z-trim(104.8): 16  B-trim: 72 in 1/50
 Lambda= 0.158142
 statistics sampled from 8065 (8067) to 8065 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.248), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(32554)
CCDS1977.1 MAT2A gene_id:4144|Hs108|chr2           ( 395) 2635 610.2 1.1e-174
CCDS7365.1 MAT1A gene_id:4143|Hs108|chr10          ( 395) 2311 536.2 1.9e-152


>>CCDS1977.1 MAT2A gene_id:4144|Hs108|chr2                (395 aa)
 initn: 2635 init1: 2635 opt: 2635  Z-score: 3249.8  bits: 610.2 E(32554): 1.1e-174
Smith-Waterman score: 2635; 100.0% identity (100.0% similar) in 395 aa overlap (1-395:1-395)

               10        20        30        40        50        60
pF1KB5 MNGQLNGFHEAFIEEGTFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MNGQLNGFHEAFIEEGTFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 KTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 KTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VHLDRNEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 VHLDRNEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 KTQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 KTQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 IYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 IYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 VAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 VAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVI
              310       320       330       340       350       360

              370       380       390     
pF1KB5 VRDLDLKKPIYQRTAAYGHFGRDSFPWEVPKKLKY
       :::::::::::::::::::::::::::::::::::
CCDS19 VRDLDLKKPIYQRTAAYGHFGRDSFPWEVPKKLKY
              370       380       390     

>>CCDS7365.1 MAT1A gene_id:4143|Hs108|chr10               (395 aa)
 initn: 2339 init1: 2311 opt: 2311  Z-score: 2850.3  bits: 536.2 E(32554): 1.9e-152
Smith-Waterman score: 2311; 84.3% identity (95.4% similar) in 395 aa overlap (1-395:1-395)

               10        20        30        40        50        60
pF1KB5 MNGQLNGFHEAFIEEGTFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVA
       ::: ..:. .  . ::.:.:::::::::::::::::::::::::::.:::.:::::::: 
CCDS73 MNGPVDGLCDHSLSEGVFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 KTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQG
       ::::.:: ::::: : ::::.:::...::::::::.::::.:::::::::::::::::: 
CCDS73 KTGMVLLCGEITSMAMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VHLDRNEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDS
       :::::::::.::::::::::::::::::::::::.:::::::..:.:::.: ::::::::
CCDS73 VHLDRNEEDVGAGDQGLMFGYATDETEECMPLTIILAHKLNARMADLRRSGLLPWLRPDS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 KTQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDT
       ::::::::::: :::.:.:.:::::::::.:.. :.::: ::::.::.::::::::::::
CCDS73 KTQVTVQYMQDNGAVIPVRIHTIVISVQHNEDITLEEMRRALKEQVIRAVVPAKYLDEDT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 IYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARW
       .:::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
CCDS73 VYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 VAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVI
       :::::::.::::::::::::::::..::::::: ::::::.:::::..:.::::::::::
CCDS73 VAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSQKTERELLDVVHKNFDLRPGVI
              310       320       330       340       350       360

              370       380       390     
pF1KB5 VRDLDLKKPIYQRTAAYGHFGRDSFPWEVPKKLKY
       ::::::::::::.:: ::::::. ::::::.:: .
CCDS73 VRDLDLKKPIYQKTACYGHFGRSEFPWEVPRKLVF
              370       380       390     




395 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:24:33 2016 done: Sat Nov  5 06:24:34 2016
 Total Scan time:  2.480 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]