Result of FASTA (omim) for
pF1KB5180
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5180, 130 aa
1>>>pF1KB5180 130 - 130 aa - 130 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1268+/-0.000316; mu= 12.5548+/- 0.020
mean_var=65.7511+/-12.774, 0's: 0 Z-trim(116.4): 20 B-trim: 211 in 2/51
Lambda= 0.158169
statistics sampled from 27561 (27581) to 27561 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.323), width: 16
Scan time: 4.450
The best scores are: opt bits E(85289)
NP_148982 (OMIM: 602412,610629) 40S ribosomal prot ( 130) 849 201.7 2.8e-52
NP_001135756 (OMIM: 602412,610629) 40S ribosomal p ( 131) 849 201.7 2.8e-52
NP_001135754 (OMIM: 602412,610629) 40S ribosomal p ( 131) 849 201.7 2.8e-52
NP_001135755 (OMIM: 602412,610629) 40S ribosomal p ( 132) 849 201.7 2.8e-52
NP_001017 (OMIM: 602412,610629) 40S ribosomal prot ( 133) 849 201.7 2.9e-52
NP_001135757 (OMIM: 602412,610629) 40S ribosomal p ( 289) 849 201.9 5.3e-52
>>NP_148982 (OMIM: 602412,610629) 40S ribosomal protein (130 aa)
initn: 849 init1: 849 opt: 849 Z-score: 1059.6 bits: 201.7 E(85289): 2.8e-52
Smith-Waterman score: 849; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB5 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_148 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_148 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT
70 80 90 100 110 120
130
pF1KB5 AKANVGAGKK
::::::::::
NP_148 AKANVGAGKK
130
>>NP_001135756 (OMIM: 602412,610629) 40S ribosomal prote (131 aa)
initn: 849 init1: 849 opt: 849 Z-score: 1059.5 bits: 201.7 E(85289): 2.8e-52
Smith-Waterman score: 849; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB5 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT
70 80 90 100 110 120
130
pF1KB5 AKANVGAGKK
::::::::::
NP_001 AKANVGAGKKK
130
>>NP_001135754 (OMIM: 602412,610629) 40S ribosomal prote (131 aa)
initn: 849 init1: 849 opt: 849 Z-score: 1059.5 bits: 201.7 E(85289): 2.8e-52
Smith-Waterman score: 849; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB5 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT
70 80 90 100 110 120
130
pF1KB5 AKANVGAGKK
::::::::::
NP_001 AKANVGAGKKK
130
>>NP_001135755 (OMIM: 602412,610629) 40S ribosomal prote (132 aa)
initn: 849 init1: 849 opt: 849 Z-score: 1059.5 bits: 201.7 E(85289): 2.8e-52
Smith-Waterman score: 849; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB5 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT
70 80 90 100 110 120
130
pF1KB5 AKANVGAGKK
::::::::::
NP_001 AKANVGAGKKKK
130
>>NP_001017 (OMIM: 602412,610629) 40S ribosomal protein (133 aa)
initn: 849 init1: 849 opt: 849 Z-score: 1059.4 bits: 201.7 E(85289): 2.9e-52
Smith-Waterman score: 849; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB5 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT
70 80 90 100 110 120
130
pF1KB5 AKANVGAGKK
::::::::::
NP_001 AKANVGAGKKPKE
130
>>NP_001135757 (OMIM: 602412,610629) 40S ribosomal prote (289 aa)
initn: 849 init1: 849 opt: 849 Z-score: 1054.5 bits: 201.9 E(85289): 5.3e-52
Smith-Waterman score: 849; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB5 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT
70 80 90 100 110 120
130
pF1KB5 AKANVGAGKK
::::::::::
NP_001 AKANVGAGKKMRELGLGVQALGRISQEERCTDVKNSKARESRGVVWQVEVPGPWSVWTCG
130 140 150 160 170 180
130 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:25:15 2016 done: Sat Nov 5 06:25:16 2016
Total Scan time: 4.450 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]