Result of FASTA (ccds) for
pF1KB5190
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5190, 588 aa
1>>>pF1KB5190 588 - 588 aa - 588 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2765+/-0.000825; mu= 12.4487+/- 0.050
mean_var=180.8431+/-36.140, 0's: 0 Z-trim(114.1): 54 B-trim: 150 in 1/51
Lambda= 0.095373
statistics sampled from 14646 (14698) to 14646 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.451), width: 16
Scan time: 4.090
The best scores are: opt bits E(32554)
CCDS35316.1 PJA1 gene_id:64219|Hs108|chrX ( 588) 4049 569.4 4.4e-162
CCDS14393.1 PJA1 gene_id:64219|Hs108|chrX ( 643) 4049 569.4 4.7e-162
CCDS14392.1 PJA1 gene_id:64219|Hs108|chrX ( 455) 2484 354.0 2.5e-97
CCDS4099.1 PJA2 gene_id:9867|Hs108|chr5 ( 708) 1211 179.0 1.8e-44
>>CCDS35316.1 PJA1 gene_id:64219|Hs108|chrX (588 aa)
initn: 4049 init1: 4049 opt: 4049 Z-score: 3023.3 bits: 569.4 E(32554): 4.4e-162
Smith-Waterman score: 4049; 100.0% identity (100.0% similar) in 588 aa overlap (1-588:1-588)
10 20 30 40 50 60
pF1KB5 MHRSAPSQTTKRSRSPFSTTRRSWDDSESSGTNLNIDNEDYSRYPPREYRASGSRRGMAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MHRSAPSQTTKRSRSPFSTTRRSWDDSESSGTNLNIDNEDYSRYPPREYRASGSRRGMAY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GHIDSYGADDSEEEGAGPVERPPVRGKTGKFKDDKLYDPEKGARSLAGPPPHFSSFSRDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GHIDSYGADDSEEEGAGPVERPPVRGKTGKFKDDKLYDPEKGARSLAGPPPHFSSFSRDV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 REERDKLDPVPAARCSASRADFLPQSSVASQSSSEGKLATKGDSSERERREQNLPARPSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 REERDKLDPVPAARCSASRADFLPQSSVASQSSSEGKLATKGDSSERERREQNLPARPSR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 APVSICGGGENTSKSAEEPVVRPKIRNLASPNCVKPKIFFDTDDDDDMPHSTSRWRDTAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 APVSICGGGENTSKSAEEPVVRPKIRNLASPNCVKPKIFFDTDDDDDMPHSTSRWRDTAN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DNEGHSDGLARRGRGESSSGYPEPKYPEDKREARSDQVKPEKVPRRRRTMADPDFWTHSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DNEGHSDGLARRGRGESSSGYPEPKYPEDKREARSDQVKPEKVPRRRRTMADPDFWTHSD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 DYYKYCDEDSDSDKEWIAALRRKYRSREQTLSSSGESWETLPGKEEREPPQAKVSASTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DYYKYCDEDSDSDKEWIAALRRKYRSREQTLSSSGESWETLPGKEEREPPQAKVSASTGT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 SPGPGASASAGAGAGASAGSNGSNYLEEVREPSLQEEQASLEEGEIPWLQYHENDSSSEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SPGPGASASAGAGAGASAGSNGSNYLEEVREPSLQEEQASLEEGEIPWLQYHENDSSSEG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 DNDSGHELMQPGVFMLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLGVAEAISYVDPQFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DNDSGHELMQPGVFMLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLGVAEAISYVDPQFL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 TYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 TYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCC
490 500 510 520 530 540
550 560 570 580
pF1KB5 PICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL
550 560 570 580
>>CCDS14393.1 PJA1 gene_id:64219|Hs108|chrX (643 aa)
initn: 4049 init1: 4049 opt: 4049 Z-score: 3022.9 bits: 569.4 E(32554): 4.7e-162
Smith-Waterman score: 4049; 100.0% identity (100.0% similar) in 588 aa overlap (1-588:56-643)
10 20 30
pF1KB5 MHRSAPSQTTKRSRSPFSTTRRSWDDSESS
::::::::::::::::::::::::::::::
CCDS14 GRRHAYVSFRPPTSQRERIASQRKTNSEVPMHRSAPSQTTKRSRSPFSTTRRSWDDSESS
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB5 GTNLNIDNEDYSRYPPREYRASGSRRGMAYGHIDSYGADDSEEEGAGPVERPPVRGKTGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GTNLNIDNEDYSRYPPREYRASGSRRGMAYGHIDSYGADDSEEEGAGPVERPPVRGKTGK
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB5 FKDDKLYDPEKGARSLAGPPPHFSSFSRDVREERDKLDPVPAARCSASRADFLPQSSVAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FKDDKLYDPEKGARSLAGPPPHFSSFSRDVREERDKLDPVPAARCSASRADFLPQSSVAS
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB5 QSSSEGKLATKGDSSERERREQNLPARPSRAPVSICGGGENTSKSAEEPVVRPKIRNLAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QSSSEGKLATKGDSSERERREQNLPARPSRAPVSICGGGENTSKSAEEPVVRPKIRNLAS
210 220 230 240 250 260
220 230 240 250 260 270
pF1KB5 PNCVKPKIFFDTDDDDDMPHSTSRWRDTANDNEGHSDGLARRGRGESSSGYPEPKYPEDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PNCVKPKIFFDTDDDDDMPHSTSRWRDTANDNEGHSDGLARRGRGESSSGYPEPKYPEDK
270 280 290 300 310 320
280 290 300 310 320 330
pF1KB5 REARSDQVKPEKVPRRRRTMADPDFWTHSDDYYKYCDEDSDSDKEWIAALRRKYRSREQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 REARSDQVKPEKVPRRRRTMADPDFWTHSDDYYKYCDEDSDSDKEWIAALRRKYRSREQT
330 340 350 360 370 380
340 350 360 370 380 390
pF1KB5 LSSSGESWETLPGKEEREPPQAKVSASTGTSPGPGASASAGAGAGASAGSNGSNYLEEVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LSSSGESWETLPGKEEREPPQAKVSASTGTSPGPGASASAGAGAGASAGSNGSNYLEEVR
390 400 410 420 430 440
400 410 420 430 440 450
pF1KB5 EPSLQEEQASLEEGEIPWLQYHENDSSSEGDNDSGHELMQPGVFMLDGNNNLEDDSSVSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EPSLQEEQASLEEGEIPWLQYHENDSSSEGDNDSGHELMQPGVFMLDGNNNLEDDSSVSE
450 460 470 480 490 500
460 470 480 490 500 510
pF1KB5 DLEVDWSLFDGFADGLGVAEAISYVDPQFLTYMALEERLAQAMETALAHLESLAVDVEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DLEVDWSLFDGFADGLGVAEAISYVDPQFLTYMALEERLAQAMETALAHLESLAVDVEVA
510 520 530 540 550 560
520 530 540 550 560 570
pF1KB5 NPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIW
570 580 590 600 610 620
580
pF1KB5 LQKSGTCPVCRCMFPPPL
::::::::::::::::::
CCDS14 LQKSGTCPVCRCMFPPPL
630 640
>>CCDS14392.1 PJA1 gene_id:64219|Hs108|chrX (455 aa)
initn: 2742 init1: 2477 opt: 2484 Z-score: 1861.0 bits: 354.0 E(32554): 2.5e-97
Smith-Waterman score: 2484; 98.6% identity (99.5% similar) in 365 aa overlap (224-588:92-455)
200 210 220 230 240 250
pF1KB5 KSAEEPVVRPKIRNLASPNCVKPKIFFDTDDDDDMPHSTSRWRDTANDNEGHSDGLARRG
:..:. :::::::::::::::::::::::
CCDS14 SQTTKRSRSPFSTTRRSWDDSESSGTNLNIDNEDYS-STSRWRDTANDNEGHSDGLARRG
70 80 90 100 110 120
260 270 280 290 300 310
pF1KB5 RGESSSGYPEPKYPEDKREARSDQVKPEKVPRRRRTMADPDFWTHSDDYYKYCDEDSDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RGESSSGYPEPKYPEDKREARSDQVKPEKVPRRRRTMADPDFWTHSDDYYKYCDEDSDSD
130 140 150 160 170 180
320 330 340 350 360 370
pF1KB5 KEWIAALRRKYRSREQTLSSSGESWETLPGKEEREPPQAKVSASTGTSPGPGASASAGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KEWIAALRRKYRSREQTLSSSGESWETLPGKEEREPPQAKVSASTGTSPGPGASASAGAG
190 200 210 220 230 240
380 390 400 410 420 430
pF1KB5 AGASAGSNGSNYLEEVREPSLQEEQASLEEGEIPWLQYHENDSSSEGDNDSGHELMQPGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AGASAGSNGSNYLEEVREPSLQEEQASLEEGEIPWLQYHENDSSSEGDNDSGHELMQPGV
250 260 270 280 290 300
440 450 460 470 480 490
pF1KB5 FMLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLGVAEAISYVDPQFLTYMALEERLAQAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FMLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLGVAEAISYVDPQFLTYMALEERLAQAM
310 320 330 340 350 360
500 510 520 530 540 550
pF1KB5 ETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVA
370 380 390 400 410 420
560 570 580
pF1KB5 TELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL
:::::::::::::::::::::::::::::::::::
CCDS14 TELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL
430 440 450
>>CCDS4099.1 PJA2 gene_id:9867|Hs108|chr5 (708 aa)
initn: 1353 init1: 1090 opt: 1211 Z-score: 912.0 bits: 179.0 E(32554): 1.8e-44
Smith-Waterman score: 1624; 46.9% identity (67.9% similar) in 605 aa overlap (4-586:107-680)
10 20 30
pF1KB5 MHRSAPSQTTKRSRSPFSTTRRSWDDSESSGTN
:: .:::. :.: : ....: . .. :..
CCDS40 SGSSPLDQVDSSLPSEPIFEKSETEIPTCGSALNQTTESSQS-FVAVHHSEEGRDTLGSS
80 90 100 110 120 130
40 50 60 70 80 90
pF1KB5 LNIDNEDYSRYPPREYRASGSRRGMAYGHIDSYGADDSEEEGAGPVERPPVRGKTGKFKD
:. :.. ..: : ::. . :.: : ::: : .. : .. . .....
CCDS40 TNLHNHSEGEYIPGACSASSVQNGIALVHTDSYDPDGKHGEDNDHLQLSAEVVEGSRYQE
140 150 160 170 180 190
100 110 120 130 140
pF1KB5 ---DKLYDPE-KGARSLAGPPPHFSSFSRDVREERDKLDPVPAARCSASRADFLPQSSVA
. ... : . :.. .: : ::. .::.: ..:: :: .. ::. ..:. :.:
CCDS40 SLGNTVFELENREAEAYTGLSPPVPSFNCEVRDEFEELDSVPLVKSSAGDTEFVHQNSQE
200 210 220 230 240 250
150 160 170 180 190 200
pF1KB5 SQSSSEGKLAT--KGDSSERERREQNLPARPSRAPVSICG-----GGENTSKSAEEPVVR
: ::. .... . ... .::. .. : . .: ::. :.. :. : :::
CCDS40 IQRSSQDEMVSTKQQNNTSQERQTEHSPEDAACGPGHICSEQNTNDREKNHGSSPEQVVR
260 270 280 290 300 310
210 220 230 240 250
pF1KB5 PKIRNLASPNCVKPKIFFDTDDDDDMPHSTSRWRDTANDNEGHSDGLARRGR---GESSS
::.:.: : . : . :. . . .:..:::.. . .:. :: : . . :: .
CCDS40 PKVRKLISSSQVDQETGFNRHEAKQ--RSVQRWREALEVEESGSDDLLIKCEEYDGEHDC
320 330 340 350 360 370
260 270 280 290 300 310
pF1KB5 GYPEPKYPE--DKREARSDQVKPEKVPRRRRTMADPDFWTHSDDYYKYCDEDSDS----D
. .: : . .::....:. :. : .: ::. :::. :.: :: :
CCDS40 MFLDPPYSRVITQRETENNQMTSESGATAGRQEVDNTFWNGCGDYYQLYDKDEDSSECSD
380 390 400 410 420 430
320 330 340 350 360 370
pF1KB5 KEWIAALRRKYRSREQTLSSSGESWETLPGKEEREPPQAKVSASTGTSPGPGASASAGAG
:: :.: ... . :. ::: :::::::::.: :: . : ::
CCDS40 GEWSASLPHRFSGTEKDQSSSDESWETLPGKDENEPEL------QSDSSGPE--------
440 450 460 470
380 390 400 410 420 430
pF1KB5 AGASAGSNGSNYLEEVREPSLQE-EQASLEEGEIPWLQYHE-NDSSSEGDNDSGHELMQP
:: .: :::: ::.::::::::::::.: :.:::. :. ..:. ::
CCDS40 -------------EENQELSLQEGEQTSLEEGEIPWLQYNEVNESSSDEGNEPANEFAQP
480 490 500 510 520
440 450 460 470 480 490
pF1KB5 GVFMLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLGVAEAISYVDPQFLTYMALEERLAQ
. :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
CCDS40 A-FMLDGNNNLEDDSSVSEDLDVDWSLFDGFADGLGVAEAISYVDPQFLTYMALEERLAQ
530 540 550 560 570 580
500 510 520 530 540 550
pF1KB5 AMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGE
:::::::::::::::::::::::::::::.::: :: ::: :.:::.:::::::::.: .
CCDS40 AMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDD
590 600 610 620 630 640
560 570 580
pF1KB5 VATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL
.::::::::.:::::::::::::::::::: :::
CCDS40 IATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFPPAVIEASAAPSSEPDPDAPPSNDSIA
650 660 670 680 690 700
CCDS40 EAP
588 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:21:08 2016 done: Fri Nov 4 22:21:09 2016
Total Scan time: 4.090 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]