Result of FASTA (omim) for
pF1KB5195
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5195, 238 aa
1>>>pF1KB5195 238 - 238 aa - 238 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.3879+/-0.000377; mu= 19.6277+/- 0.023
mean_var=64.2861+/-13.578, 0's: 0 Z-trim(112.5): 100 B-trim: 65 in 1/48
Lambda= 0.159962
statistics sampled from 21285 (21386) to 21285 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.251), width: 16
Scan time: 6.180
The best scores are: opt bits E(85289)
NP_001244319 (OMIM: 155740) CD63 antigen isoform A ( 238) 1592 375.9 3.3e-104
NP_001254627 (OMIM: 155740) CD63 antigen isoform A ( 238) 1592 375.9 3.3e-104
NP_001244320 (OMIM: 155740) CD63 antigen isoform A ( 238) 1592 375.9 3.3e-104
NP_001771 (OMIM: 155740) CD63 antigen isoform A [H ( 238) 1592 375.9 3.3e-104
NP_001244318 (OMIM: 155740) CD63 antigen isoform A ( 238) 1592 375.9 3.3e-104
NP_001244321 (OMIM: 155740) CD63 antigen isoform C ( 215) 1306 309.9 2.2e-84
NP_001244329 (OMIM: 155740) CD63 antigen isoform D ( 156) 1048 250.2 1.5e-66
NP_001244330 (OMIM: 155740) CD63 antigen isoform D ( 156) 1048 250.2 1.5e-66
NP_004606 (OMIM: 300096,300210) tetraspanin-7 [Hom ( 249) 490 121.6 1.2e-27
NP_001161792 (OMIM: 613137) tetraspanin-9 [Homo sa ( 239) 482 119.8 4.2e-27
NP_006666 (OMIM: 613137) tetraspanin-9 [Homo sapie ( 239) 482 119.8 4.2e-27
XP_005253159 (OMIM: 602644) PREDICTED: tetraspanin ( 238) 454 113.3 3.7e-25
NP_001020408 (OMIM: 602644) tetraspanin-4 isoform ( 238) 454 113.3 3.7e-25
NP_001020407 (OMIM: 602644) tetraspanin-4 isoform ( 238) 454 113.3 3.7e-25
NP_001020405 (OMIM: 602644) tetraspanin-4 isoform ( 238) 454 113.3 3.7e-25
NP_003262 (OMIM: 602644) tetraspanin-4 isoform a [ ( 238) 454 113.3 3.7e-25
NP_001020409 (OMIM: 602644) tetraspanin-4 isoform ( 238) 454 113.3 3.7e-25
NP_001020406 (OMIM: 602644) tetraspanin-4 isoform ( 238) 454 113.3 3.7e-25
NP_003261 (OMIM: 300191) tetraspanin-6 isoform a [ ( 245) 450 112.4 7.2e-25
XP_011518638 (OMIM: 602644) PREDICTED: tetraspanin ( 269) 432 108.3 1.4e-23
NP_005715 (OMIM: 613134) tetraspanin-3 isoform 1 [ ( 253) 413 103.9 2.7e-22
NP_004607 (OMIM: 600769) tetraspanin-8 [Homo sapie ( 237) 402 101.3 1.5e-21
XP_016875402 (OMIM: 600769) PREDICTED: tetraspanin ( 237) 402 101.3 1.5e-21
XP_006719646 (OMIM: 600769) PREDICTED: tetraspanin ( 237) 402 101.3 1.5e-21
XP_011518642 (OMIM: 602644) PREDICTED: tetraspanin ( 174) 394 99.3 4.4e-21
XP_011518639 (OMIM: 602644) PREDICTED: tetraspanin ( 174) 394 99.3 4.4e-21
NP_001020410 (OMIM: 602644) tetraspanin-4 isoform ( 174) 394 99.3 4.4e-21
XP_011518640 (OMIM: 602644) PREDICTED: tetraspanin ( 174) 394 99.3 4.4e-21
XP_011518643 (OMIM: 602644) PREDICTED: tetraspanin ( 174) 394 99.3 4.4e-21
XP_011519214 (OMIM: 613137) PREDICTED: tetraspanin ( 175) 383 96.8 2.6e-20
XP_011519215 (OMIM: 613137) PREDICTED: tetraspanin ( 175) 383 96.8 2.6e-20
XP_016877346 (OMIM: 613134) PREDICTED: tetraspanin ( 214) 364 92.5 6.2e-19
NP_001265670 (OMIM: 300191) tetraspanin-6 isoform ( 157) 343 87.5 1.4e-17
XP_011529320 (OMIM: 300191) PREDICTED: tetraspanin ( 157) 343 87.5 1.4e-17
NP_001265669 (OMIM: 300191) tetraspanin-6 isoform ( 157) 343 87.5 1.4e-17
XP_006716023 (OMIM: 610120) PREDICTED: tetraspanin ( 282) 316 81.5 1.6e-15
NP_848657 (OMIM: 610120) tetraspanin-33 [Homo sapi ( 283) 314 81.1 2.2e-15
XP_005253161 (OMIM: 602644) PREDICTED: tetraspanin ( 174) 309 79.7 3.5e-15
XP_011518641 (OMIM: 602644) PREDICTED: tetraspanin ( 174) 309 79.7 3.5e-15
NP_000551 (OMIM: 151525) leukocyte surface antigen ( 219) 310 80.1 3.5e-15
NP_001035122 (OMIM: 151525) leukocyte surface anti ( 219) 310 80.1 3.5e-15
NP_005718 (OMIM: 613170) tetraspanin-1 [Homo sapie ( 241) 309 79.9 4.5e-15
XP_011538762 (OMIM: 613170) PREDICTED: tetraspanin ( 258) 304 78.7 1e-14
NP_001265671 (OMIM: 300191) tetraspanin-6 isoform ( 137) 294 76.2 3.3e-14
NP_036471 (OMIM: 613140) tetraspanin-15 [Homo sapi ( 294) 295 76.7 4.8e-14
NP_001161884 (OMIM: 613134) tetraspanin-3 isoform ( 189) 288 74.9 1.1e-13
XP_005250296 (OMIM: 613138,613310) PREDICTED: tetr ( 305) 285 74.4 2.4e-13
XP_011514295 (OMIM: 613138,613310) PREDICTED: tetr ( 305) 285 74.4 2.4e-13
NP_036470 (OMIM: 613138,613310) tetraspanin-12 [Ho ( 305) 285 74.4 2.4e-13
XP_016867401 (OMIM: 613138,613310) PREDICTED: tetr ( 305) 285 74.4 2.4e-13
>>NP_001244319 (OMIM: 155740) CD63 antigen isoform A [Ho (238 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1991.9 bits: 375.9 E(85289): 3.3e-104
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)
10 20 30 40 50 60
pF1KB5 MAVEGGMKCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVEGGMKCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGIN
130 140 150 160 170 180
190 200 210 220 230
pF1KB5 FNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGYEVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGYEVM
190 200 210 220 230
>>NP_001254627 (OMIM: 155740) CD63 antigen isoform A [Ho (238 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1991.9 bits: 375.9 E(85289): 3.3e-104
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)
10 20 30 40 50 60
pF1KB5 MAVEGGMKCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVEGGMKCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGIN
130 140 150 160 170 180
190 200 210 220 230
pF1KB5 FNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGYEVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGYEVM
190 200 210 220 230
>>NP_001244320 (OMIM: 155740) CD63 antigen isoform A [Ho (238 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1991.9 bits: 375.9 E(85289): 3.3e-104
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)
10 20 30 40 50 60
pF1KB5 MAVEGGMKCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVEGGMKCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGIN
130 140 150 160 170 180
190 200 210 220 230
pF1KB5 FNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGYEVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGYEVM
190 200 210 220 230
>>NP_001771 (OMIM: 155740) CD63 antigen isoform A [Homo (238 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1991.9 bits: 375.9 E(85289): 3.3e-104
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)
10 20 30 40 50 60
pF1KB5 MAVEGGMKCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVEGGMKCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGIN
130 140 150 160 170 180
190 200 210 220 230
pF1KB5 FNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGYEVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGYEVM
190 200 210 220 230
>>NP_001244318 (OMIM: 155740) CD63 antigen isoform A [Ho (238 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1991.9 bits: 375.9 E(85289): 3.3e-104
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)
10 20 30 40 50 60
pF1KB5 MAVEGGMKCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVEGGMKCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGIN
130 140 150 160 170 180
190 200 210 220 230
pF1KB5 FNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGYEVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGYEVM
190 200 210 220 230
>>NP_001244321 (OMIM: 155740) CD63 antigen isoform C [Ho (215 aa)
initn: 1306 init1: 1306 opt: 1306 Z-score: 1635.8 bits: 309.9 E(85289): 2.2e-84
Smith-Waterman score: 1398; 90.3% identity (90.3% similar) in 238 aa overlap (1-238:1-215)
10 20 30 40 50 60
pF1KB5 MAVEGGMKCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAV
:::::::::::::::::::::: :::::::::::::::
NP_001 MAVEGGMKCVKFLLYVLLLAFC-----------------------GATPGSLLPVVIIAV
10 20 30
70 80 90 100 110 120
pF1KB5 GVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFR
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB5 QQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGIN
100 110 120 130 140 150
190 200 210 220 230
pF1KB5 FNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGYEVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGYEVM
160 170 180 190 200 210
>>NP_001244329 (OMIM: 155740) CD63 antigen isoform D pre (156 aa)
initn: 1048 init1: 1048 opt: 1048 Z-score: 1315.8 bits: 250.2 E(85289): 1.5e-66
Smith-Waterman score: 1048; 100.0% identity (100.0% similar) in 156 aa overlap (83-238:1-156)
60 70 80 90 100 110
pF1KB5 LPVVIIAVGVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVM
::::::::::::::::::::::::::::::
NP_001 MITFAIFLSLIMLVEVAAAIAGYVFRDKVM
10 20 30
120 130 140 150 160 170
pF1KB5 SEFNNNFRQQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEFNNNFRQQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCIN
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB5 VTVGCGINFNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTVGCGINFNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIR
100 110 120 130 140 150
pF1KB5 SGYEVM
::::::
NP_001 SGYEVM
>>NP_001244330 (OMIM: 155740) CD63 antigen isoform D pre (156 aa)
initn: 1048 init1: 1048 opt: 1048 Z-score: 1315.8 bits: 250.2 E(85289): 1.5e-66
Smith-Waterman score: 1048; 100.0% identity (100.0% similar) in 156 aa overlap (83-238:1-156)
60 70 80 90 100 110
pF1KB5 LPVVIIAVGVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVM
::::::::::::::::::::::::::::::
NP_001 MITFAIFLSLIMLVEVAAAIAGYVFRDKVM
10 20 30
120 130 140 150 160 170
pF1KB5 SEFNNNFRQQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEFNNNFRQQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCIN
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB5 VTVGCGINFNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTVGCGINFNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIR
100 110 120 130 140 150
pF1KB5 SGYEVM
::::::
NP_001 SGYEVM
>>NP_004606 (OMIM: 300096,300210) tetraspanin-7 [Homo sa (249 aa)
initn: 490 init1: 356 opt: 490 Z-score: 617.2 bits: 121.6 E(85289): 1.2e-27
Smith-Waterman score: 490; 30.2% identity (68.2% similar) in 245 aa overlap (1-238:6-249)
10 20 30 40 50
pF1KB5 MAVEGGMKCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSLLPV
: .. . :.: :: . ..: .: :.:::: ..:.:. : : .. :
NP_004 MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPY
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 VIIAVGVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEF
:.:..:. . . .. :: ..:. . .. .:.::::..:.:..:.:.:.::: .. . :
NP_004 VLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB5 NNNFRQQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTV
.. . :..: :.. . .:..: ...:::. :::.: : . .. .: :::.: :
NP_004 LRTYTDAMQTYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNET-
130 140 150 160 170
180 190 200 210 220
pF1KB5 GCG------INFNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVK
:. .. ....:: . . .... :. ..:..:.:::: ...:...:::: .
NP_004 DCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSR
180 190 200 210 220 230
230
pF1KB5 SIRSG-YEVM
: .. ::..
NP_004 FITANQYEMV
240
>>NP_001161792 (OMIM: 613137) tetraspanin-9 [Homo sapien (239 aa)
initn: 415 init1: 219 opt: 482 Z-score: 607.5 bits: 119.8 E(85289): 4.2e-27
Smith-Waterman score: 482; 33.1% identity (67.4% similar) in 236 aa overlap (5-234:4-234)
10 20 30 40 50
pF1KB5 MAVEGGMKCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPG--SLLPV-VI
: . :.:...... : : :. ::. ::: : .:: . .:. :: . ..
NP_001 MARGCLCCLKYMMFLFNLIFWLCGCGLL--GVGIWLSVSQGNFATFSPSFPSLSAANLV
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 IAVGVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNN
::.:.......:.:: :: ::: ::...: : : .:.:.:. : .:. ::: . ..
NP_001 IAIGTIVMVTGFLGCLGAIKENKCLLLSFFIVLLVILLAELILLILFFVYMDKVNENAKK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 NFRQQMENYPKNNHTA--SILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTV
.... . : .:... . . .::...:::...:::: : ...: ::: ::.. .
NP_001 DLKEGLLLYHTENNVGLKNAWNIIQAEMRCCGVTDYTDW--YPVLGENTVPDRCCMENSQ
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 GCGINFNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSI-RSG
::: : . . :: ::. :. : :...... : ....::..:. : . : :.:
NP_001 GCGRN-ATTPLWRTGCYEKVKMWFDDNKHVLGTVGMCILIMQILGMAFSMTLFQHIHRTG
180 190 200 210 220 230
pF1KB5 YEVM
NP_001 KKYDA
238 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:27:05 2016 done: Sat Nov 5 06:27:06 2016
Total Scan time: 6.180 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]