Result of FASTA (ccds) for
pF1KB5211
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5211, 378 aa
1>>>pF1KB5211 378 - 378 aa - 378 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9179+/-0.000823; mu= 18.4751+/- 0.049
mean_var=61.7505+/-12.272, 0's: 0 Z-trim(106.1): 38 B-trim: 2 in 1/50
Lambda= 0.163213
statistics sampled from 8748 (8782) to 8748 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.27), width: 16
Scan time: 2.690
The best scores are: opt bits E(32554)
CCDS14113.1 IL3RA gene_id:3563|Hs108|chrX ( 378) 2607 622.5 1.9e-178
CCDS14113.1 IL3RA gene_id:3563|Hs108|chrY ( 378) 2607 622.5 1.9e-178
CCDS59158.1 IL3RA gene_id:3563|Hs108|chrX ( 300) 1926 462.1 3e-130
CCDS59158.1 IL3RA gene_id:3563|Hs108|chrY ( 300) 1926 462.1 3e-130
CCDS35191.1 CSF2RA gene_id:1438|Hs108|chrX ( 400) 590 147.6 1.9e-35
CCDS35191.1 CSF2RA gene_id:1438|Hs108|chrY ( 400) 590 147.6 1.9e-35
CCDS55360.1 CSF2RA gene_id:1438|Hs108|chrY ( 410) 566 141.9 9.6e-34
CCDS55360.1 CSF2RA gene_id:1438|Hs108|chrX ( 410) 566 141.9 9.6e-34
CCDS35190.1 CSF2RA gene_id:1438|Hs108|chrX ( 377) 472 119.8 4.1e-27
CCDS35190.1 CSF2RA gene_id:1438|Hs108|chrY ( 377) 472 119.8 4.1e-27
CCDS35192.1 CSF2RA gene_id:1438|Hs108|chrX ( 333) 471 119.5 4.4e-27
CCDS35192.1 CSF2RA gene_id:1438|Hs108|chrY ( 333) 471 119.5 4.4e-27
CCDS55359.1 CSF2RA gene_id:1438|Hs108|chrY ( 434) 471 119.6 5.4e-27
CCDS55359.1 CSF2RA gene_id:1438|Hs108|chrX ( 434) 471 119.6 5.4e-27
CCDS55361.1 CSF2RA gene_id:1438|Hs108|chrY ( 267) 442 112.6 4.2e-25
CCDS55361.1 CSF2RA gene_id:1438|Hs108|chrX ( 267) 442 112.6 4.2e-25
CCDS35193.1 CSF2RA gene_id:1438|Hs108|chrY ( 233) 364 94.2 1.3e-19
CCDS35193.1 CSF2RA gene_id:1438|Hs108|chrX ( 233) 364 94.2 1.3e-19
CCDS2559.1 IL5RA gene_id:3568|Hs108|chr3 ( 420) 294 77.9 1.9e-14
CCDS58813.1 IL5RA gene_id:3568|Hs108|chr3 ( 378) 246 66.5 4.3e-11
>>CCDS14113.1 IL3RA gene_id:3563|Hs108|chrX (378 aa)
initn: 2607 init1: 2607 opt: 2607 Z-score: 3317.1 bits: 622.5 E(32554): 1.9e-178
Smith-Waterman score: 2607; 100.0% identity (100.0% similar) in 378 aa overlap (1-378:1-378)
10 20 30 40 50 60
pF1KB5 MVLLWLTLLLIALPCLLQTKEDPNPPITNLRMKAKAQQLTWDLNRNVTDIECVKDADYSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MVLLWLTLLLIALPCLLQTKEDPNPPITNLRMKAKAQQLTWDLNRNVTDIECVKDADYSM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 PAVNNSYCQFGAISLCEVTNYTVRVANPPFSTWILFPENSGKPWAGAENLTCWIHDVDFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PAVNNSYCQFGAISLCEVTNYTVRVANPPFSTWILFPENSGKPWAGAENLTCWIHDVDFL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 SCSWAVGPGAPADVQYDLYLNVANRRQQYECLHYKTDAQGTRIGCRFDDISRLSSGSQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SCSWAVGPGAPADVQYDLYLNVANRRQQYECLHYKTDAQGTRIGCRFDDISRLSSGSQSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 HILVRGRSAAFGIPCTDKFVVFSQIEILTPPNMTAKCNKTHSFMHWKMRSHFNRKFRYEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HILVRGRSAAFGIPCTDKFVVFSQIEILTPPNMTAKCNKTHSFMHWKMRSHFNRKFRYEL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 QIQKRMQPVITEQVRDRTSFQLLNPGTYTVQIRARERVYEFLSAWSTPQRFECDQEEGAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QIQKRMQPVITEQVRDRTSFQLLNPGTYTVQIRARERVYEFLSAWSTPQRFECDQEEGAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 TRAWRTSLLIALGTLLALVCVFVICRRYLVMQRLFPRIPHMKDPIGDSFQNDKLVVWEAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TRAWRTSLLIALGTLLALVCVFVICRRYLVMQRLFPRIPHMKDPIGDSFQNDKLVVWEAG
310 320 330 340 350 360
370
pF1KB5 KAGLEECLVTEVQVVQKT
::::::::::::::::::
CCDS14 KAGLEECLVTEVQVVQKT
370
>>CCDS14113.1 IL3RA gene_id:3563|Hs108|chrY (378 aa)
initn: 2607 init1: 2607 opt: 2607 Z-score: 3317.1 bits: 622.5 E(32554): 1.9e-178
Smith-Waterman score: 2607; 100.0% identity (100.0% similar) in 378 aa overlap (1-378:1-378)
10 20 30 40 50 60
pF1KB5 MVLLWLTLLLIALPCLLQTKEDPNPPITNLRMKAKAQQLTWDLNRNVTDIECVKDADYSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MVLLWLTLLLIALPCLLQTKEDPNPPITNLRMKAKAQQLTWDLNRNVTDIECVKDADYSM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 PAVNNSYCQFGAISLCEVTNYTVRVANPPFSTWILFPENSGKPWAGAENLTCWIHDVDFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PAVNNSYCQFGAISLCEVTNYTVRVANPPFSTWILFPENSGKPWAGAENLTCWIHDVDFL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 SCSWAVGPGAPADVQYDLYLNVANRRQQYECLHYKTDAQGTRIGCRFDDISRLSSGSQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SCSWAVGPGAPADVQYDLYLNVANRRQQYECLHYKTDAQGTRIGCRFDDISRLSSGSQSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 HILVRGRSAAFGIPCTDKFVVFSQIEILTPPNMTAKCNKTHSFMHWKMRSHFNRKFRYEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HILVRGRSAAFGIPCTDKFVVFSQIEILTPPNMTAKCNKTHSFMHWKMRSHFNRKFRYEL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 QIQKRMQPVITEQVRDRTSFQLLNPGTYTVQIRARERVYEFLSAWSTPQRFECDQEEGAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QIQKRMQPVITEQVRDRTSFQLLNPGTYTVQIRARERVYEFLSAWSTPQRFECDQEEGAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 TRAWRTSLLIALGTLLALVCVFVICRRYLVMQRLFPRIPHMKDPIGDSFQNDKLVVWEAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TRAWRTSLLIALGTLLALVCVFVICRRYLVMQRLFPRIPHMKDPIGDSFQNDKLVVWEAG
310 320 330 340 350 360
370
pF1KB5 KAGLEECLVTEVQVVQKT
::::::::::::::::::
CCDS14 KAGLEECLVTEVQVVQKT
370
>>CCDS59158.1 IL3RA gene_id:3563|Hs108|chrX (300 aa)
initn: 1924 init1: 1924 opt: 1926 Z-score: 2452.0 bits: 462.1 E(32554): 3e-130
Smith-Waterman score: 1926; 97.9% identity (99.3% similar) in 285 aa overlap (94-378:16-300)
70 80 90 100 110 120
pF1KB5 NNSYCQFGAISLCEVTNYTVRVANPPFSTWILFPENSGKPWAGAENLTCWIHDVDFLSCS
.: ...:::::::::::::::::::::::
CCDS59 MVLLWLTLLLIALPCLLQTKEGGKPWAGAENLTCWIHDVDFLSCS
10 20 30 40
130 140 150 160 170 180
pF1KB5 WAVGPGAPADVQYDLYLNVANRRQQYECLHYKTDAQGTRIGCRFDDISRLSSGSQSSHIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WAVGPGAPADVQYDLYLNVANRRQQYECLHYKTDAQGTRIGCRFDDISRLSSGSQSSHIL
50 60 70 80 90 100
190 200 210 220 230 240
pF1KB5 VRGRSAAFGIPCTDKFVVFSQIEILTPPNMTAKCNKTHSFMHWKMRSHFNRKFRYELQIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VRGRSAAFGIPCTDKFVVFSQIEILTPPNMTAKCNKTHSFMHWKMRSHFNRKFRYELQIQ
110 120 130 140 150 160
250 260 270 280 290 300
pF1KB5 KRMQPVITEQVRDRTSFQLLNPGTYTVQIRARERVYEFLSAWSTPQRFECDQEEGANTRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KRMQPVITEQVRDRTSFQLLNPGTYTVQIRARERVYEFLSAWSTPQRFECDQEEGANTRA
170 180 190 200 210 220
310 320 330 340 350 360
pF1KB5 WRTSLLIALGTLLALVCVFVICRRYLVMQRLFPRIPHMKDPIGDSFQNDKLVVWEAGKAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WRTSLLIALGTLLALVCVFVICRRYLVMQRLFPRIPHMKDPIGDSFQNDKLVVWEAGKAG
230 240 250 260 270 280
370
pF1KB5 LEECLVTEVQVVQKT
:::::::::::::::
CCDS59 LEECLVTEVQVVQKT
290 300
>>CCDS59158.1 IL3RA gene_id:3563|Hs108|chrY (300 aa)
initn: 1924 init1: 1924 opt: 1926 Z-score: 2452.0 bits: 462.1 E(32554): 3e-130
Smith-Waterman score: 1926; 97.9% identity (99.3% similar) in 285 aa overlap (94-378:16-300)
70 80 90 100 110 120
pF1KB5 NNSYCQFGAISLCEVTNYTVRVANPPFSTWILFPENSGKPWAGAENLTCWIHDVDFLSCS
.: ...:::::::::::::::::::::::
CCDS59 MVLLWLTLLLIALPCLLQTKEGGKPWAGAENLTCWIHDVDFLSCS
10 20 30 40
130 140 150 160 170 180
pF1KB5 WAVGPGAPADVQYDLYLNVANRRQQYECLHYKTDAQGTRIGCRFDDISRLSSGSQSSHIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WAVGPGAPADVQYDLYLNVANRRQQYECLHYKTDAQGTRIGCRFDDISRLSSGSQSSHIL
50 60 70 80 90 100
190 200 210 220 230 240
pF1KB5 VRGRSAAFGIPCTDKFVVFSQIEILTPPNMTAKCNKTHSFMHWKMRSHFNRKFRYELQIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VRGRSAAFGIPCTDKFVVFSQIEILTPPNMTAKCNKTHSFMHWKMRSHFNRKFRYELQIQ
110 120 130 140 150 160
250 260 270 280 290 300
pF1KB5 KRMQPVITEQVRDRTSFQLLNPGTYTVQIRARERVYEFLSAWSTPQRFECDQEEGANTRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KRMQPVITEQVRDRTSFQLLNPGTYTVQIRARERVYEFLSAWSTPQRFECDQEEGANTRA
170 180 190 200 210 220
310 320 330 340 350 360
pF1KB5 WRTSLLIALGTLLALVCVFVICRRYLVMQRLFPRIPHMKDPIGDSFQNDKLVVWEAGKAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WRTSLLIALGTLLALVCVFVICRRYLVMQRLFPRIPHMKDPIGDSFQNDKLVVWEAGKAG
230 240 250 260 270 280
370
pF1KB5 LEECLVTEVQVVQKT
:::::::::::::::
CCDS59 LEECLVTEVQVVQKT
290 300
>>CCDS35191.1 CSF2RA gene_id:1438|Hs108|chrX (400 aa)
initn: 506 init1: 210 opt: 590 Z-score: 750.0 bits: 147.6 E(32554): 1.9e-35
Smith-Waterman score: 643; 31.9% identity (63.0% similar) in 408 aa overlap (1-372:1-399)
10 20 30 40 50
pF1KB5 MVLLWLTLLLIALP----CLLQTKED--PNPPIT--NLRMKAKAQQLTWDLNRNVTDIEC
:.:: .::: :: :. : : : . :.:. .....:.:: ..:.: .:
CCDS35 MLLLVTSLLLCELPHPAFLLIPEKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKC
10 20 30 40 50 60
60 70 80 90 100
pF1KB5 V---KDADYSMPAVNNSYCQ--FGAISLCEVTNYTVRVANPP--FSTWILFPENSGKPWA
: : ..:. :. : : : : ... :.: . :. .:.: :::. .
CCDS35 FLTDKKNRVVEPRLSNNECSCTFREICLHEGVTFEVHVNTSQRGFQQKLLYP-NSGREGT
70 80 90 100 110
110 120 130 140 150 160
pF1KB5 GAENLTCWIHDVDFLSCSWAVGPGAPADVQYDLYLNVANRRQQYECLHYKTDAQGTRIGC
.:.:..:.:...:...:.:: :: :: :::: ::. ..::.. .: .: :. ::..::
CCDS35 AAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIRNSKRRREIRCPYYIQDS-GTHVGC
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB5 RFDDISRLSSGSQSSHILVRGRSAAFGIPCTDKFVVFSQIEILTPP-NMTAKCNKTHSFM
..:..: :.: ...:: : : .:: :... ..:: ..:: :.:..:: :: ..
CCDS35 HLDNLSGLTS---RNYFLVNGTSREIGIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLV
180 190 200 210 220 230
230 240 250 260 270
pF1KB5 HWKMRSHFNR----KFRYELQIQKR-MQP-------VITEQVRDRTSFQLLNP-GTYTVQ
.::. ... :.:.:..... :: .. ....: .: .: . ..:.
CCDS35 RWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLENRYNFPSSEPRAKHSVK
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB5 IRARE-RVYEFLSAWSTPQRFECDQEEGANTRAWRTSLLIALGTLLALVCVFVICRRYLV
::: . :. .. :.:: .: : .: : . .:. .:::. . . . .:.:
CCDS35 IRAADVRILNW-SSWSEAIEFGSD--DG-NLGSVYIYVLLIVGTLVCGIVLGFLFKRFLR
300 310 320 330 340 350
340 350 360 370
pF1KB5 MQRLFPRIPHMKDPIGDSFQNDKLVVWEA-----GKAGLEECL-VTEVQVVQKT
.::::: .:..:: ..:. . . ..:: ::. :: : : :.
CCDS35 IQRLFPPVPQIKDKLNDNHEVEDEIIWEEFTPEEGKGYREEVLTVKEIT
360 370 380 390 400
>>CCDS35191.1 CSF2RA gene_id:1438|Hs108|chrY (400 aa)
initn: 506 init1: 210 opt: 590 Z-score: 750.0 bits: 147.6 E(32554): 1.9e-35
Smith-Waterman score: 643; 31.9% identity (63.0% similar) in 408 aa overlap (1-372:1-399)
10 20 30 40 50
pF1KB5 MVLLWLTLLLIALP----CLLQTKED--PNPPIT--NLRMKAKAQQLTWDLNRNVTDIEC
:.:: .::: :: :. : : : . :.:. .....:.:: ..:.: .:
CCDS35 MLLLVTSLLLCELPHPAFLLIPEKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKC
10 20 30 40 50 60
60 70 80 90 100
pF1KB5 V---KDADYSMPAVNNSYCQ--FGAISLCEVTNYTVRVANPP--FSTWILFPENSGKPWA
: : ..:. :. : : : : ... :.: . :. .:.: :::. .
CCDS35 FLTDKKNRVVEPRLSNNECSCTFREICLHEGVTFEVHVNTSQRGFQQKLLYP-NSGREGT
70 80 90 100 110
110 120 130 140 150 160
pF1KB5 GAENLTCWIHDVDFLSCSWAVGPGAPADVQYDLYLNVANRRQQYECLHYKTDAQGTRIGC
.:.:..:.:...:...:.:: :: :: :::: ::. ..::.. .: .: :. ::..::
CCDS35 AAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIRNSKRRREIRCPYYIQDS-GTHVGC
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB5 RFDDISRLSSGSQSSHILVRGRSAAFGIPCTDKFVVFSQIEILTPP-NMTAKCNKTHSFM
..:..: :.: ...:: : : .:: :... ..:: ..:: :.:..:: :: ..
CCDS35 HLDNLSGLTS---RNYFLVNGTSREIGIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLV
180 190 200 210 220 230
230 240 250 260 270
pF1KB5 HWKMRSHFNR----KFRYELQIQKR-MQP-------VITEQVRDRTSFQLLNP-GTYTVQ
.::. ... :.:.:..... :: .. ....: .: .: . ..:.
CCDS35 RWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLENRYNFPSSEPRAKHSVK
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB5 IRARE-RVYEFLSAWSTPQRFECDQEEGANTRAWRTSLLIALGTLLALVCVFVICRRYLV
::: . :. .. :.:: .: : .: : . .:. .:::. . . . .:.:
CCDS35 IRAADVRILNW-SSWSEAIEFGSD--DG-NLGSVYIYVLLIVGTLVCGIVLGFLFKRFLR
300 310 320 330 340 350
340 350 360 370
pF1KB5 MQRLFPRIPHMKDPIGDSFQNDKLVVWEA-----GKAGLEECL-VTEVQVVQKT
.::::: .:..:: ..:. . . ..:: ::. :: : : :.
CCDS35 IQRLFPPVPQIKDKLNDNHEVEDEIIWEEFTPEEGKGYREEVLTVKEIT
360 370 380 390 400
>>CCDS55360.1 CSF2RA gene_id:1438|Hs108|chrY (410 aa)
initn: 482 init1: 210 opt: 566 Z-score: 719.3 bits: 141.9 E(32554): 9.6e-34
Smith-Waterman score: 614; 31.6% identity (63.9% similar) in 380 aa overlap (1-350:1-371)
10 20 30 40 50
pF1KB5 MVLLWLTLLLIALP----CLLQTKED--PNPPIT--NLRMKAKAQQLTWDLNRNVTDIEC
:.:: .::: :: :. : : : . :.:. .....:.:: ..:.: .:
CCDS55 MLLLVTSLLLCELPHPAFLLIPEKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKC
10 20 30 40 50 60
60 70 80 90 100
pF1KB5 V---KDADYSMPAVNNSYCQ--FGAISLCEVTNYTVRVANPP--FSTWILFPENSGKPWA
: : ..:. :. : : : : ... :.: . :. .:.: :::. .
CCDS55 FLTDKKNRVVEPRLSNNECSCTFREICLHEGVTFEVHVNTSQRGFQQKLLYP-NSGREGT
70 80 90 100 110
110 120 130 140 150 160
pF1KB5 GAENLTCWIHDVDFLSCSWAVGPGAPADVQYDLYLNVANRRQQYECLHYKTDAQGTRIGC
.:.:..:.:...:...:.:: :: :: :::: ::. ..::.. .: .: :. ::..::
CCDS55 AAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIRNSKRRREIRCPYYIQDS-GTHVGC
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB5 RFDDISRLSSGSQSSHILVRGRSAAFGIPCTDKFVVFSQIEILTPP-NMTAKCNKTHSFM
..:..: :.: ...:: : : .:: :... ..:: ..:: :.:..:: :: ..
CCDS55 HLDNLSGLTS---RNYFLVNGTSREIGIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLV
180 190 200 210 220 230
230 240 250 260 270
pF1KB5 HWKMRSHFNR----KFRYELQIQKR-MQP-------VITEQVRDRTSFQLLNP-GTYTVQ
.::. ... :.:.:..... :: .. ....: .: .: . ..:.
CCDS55 RWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLENRYNFPSSEPRAKHSVK
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB5 IRARE-RVYEFLSAWSTPQRFECDQEEGANTRAWRTSLLIALGTLLALVCVFVICRRYLV
::: . :. .. :.:: .: :. .: . .:. .:::. . . . .:.:
CCDS55 IRAADVRILNW-SSWSEAIEFGSDD---GNLGSVYIYVLLIVGTLVCGIVLGFLFKRFLR
300 310 320 330 340 350
340 350 360 370
pF1KB5 MQRLFPRIPHMKDPIGDSFQNDKLVVWEAGKAGLEECLVTEVQVVQKT
.::::: .:..:: ..:. .
CCDS55 IQRLFPPVPQIKDKLNDNHEVEDEMGPQRHHRCGWNLYPTPGPSPGSGSSPRLGSESSL
360 370 380 390 400 410
>>CCDS55360.1 CSF2RA gene_id:1438|Hs108|chrX (410 aa)
initn: 482 init1: 210 opt: 566 Z-score: 719.3 bits: 141.9 E(32554): 9.6e-34
Smith-Waterman score: 614; 31.6% identity (63.9% similar) in 380 aa overlap (1-350:1-371)
10 20 30 40 50
pF1KB5 MVLLWLTLLLIALP----CLLQTKED--PNPPIT--NLRMKAKAQQLTWDLNRNVTDIEC
:.:: .::: :: :. : : : . :.:. .....:.:: ..:.: .:
CCDS55 MLLLVTSLLLCELPHPAFLLIPEKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKC
10 20 30 40 50 60
60 70 80 90 100
pF1KB5 V---KDADYSMPAVNNSYCQ--FGAISLCEVTNYTVRVANPP--FSTWILFPENSGKPWA
: : ..:. :. : : : : ... :.: . :. .:.: :::. .
CCDS55 FLTDKKNRVVEPRLSNNECSCTFREICLHEGVTFEVHVNTSQRGFQQKLLYP-NSGREGT
70 80 90 100 110
110 120 130 140 150 160
pF1KB5 GAENLTCWIHDVDFLSCSWAVGPGAPADVQYDLYLNVANRRQQYECLHYKTDAQGTRIGC
.:.:..:.:...:...:.:: :: :: :::: ::. ..::.. .: .: :. ::..::
CCDS55 AAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIRNSKRRREIRCPYYIQDS-GTHVGC
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB5 RFDDISRLSSGSQSSHILVRGRSAAFGIPCTDKFVVFSQIEILTPP-NMTAKCNKTHSFM
..:..: :.: ...:: : : .:: :... ..:: ..:: :.:..:: :: ..
CCDS55 HLDNLSGLTS---RNYFLVNGTSREIGIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLV
180 190 200 210 220 230
230 240 250 260 270
pF1KB5 HWKMRSHFNR----KFRYELQIQKR-MQP-------VITEQVRDRTSFQLLNP-GTYTVQ
.::. ... :.:.:..... :: .. ....: .: .: . ..:.
CCDS55 RWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLENRYNFPSSEPRAKHSVK
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB5 IRARE-RVYEFLSAWSTPQRFECDQEEGANTRAWRTSLLIALGTLLALVCVFVICRRYLV
::: . :. .. :.:: .: :. .: . .:. .:::. . . . .:.:
CCDS55 IRAADVRILNW-SSWSEAIEFGSDD---GNLGSVYIYVLLIVGTLVCGIVLGFLFKRFLR
300 310 320 330 340 350
340 350 360 370
pF1KB5 MQRLFPRIPHMKDPIGDSFQNDKLVVWEAGKAGLEECLVTEVQVVQKT
.::::: .:..:: ..:. .
CCDS55 IQRLFPPVPQIKDKLNDNHEVEDEMGPQRHHRCGWNLYPTPGPSPGSGSSPRLGSESSL
360 370 380 390 400 410
>>CCDS35190.1 CSF2RA gene_id:1438|Hs108|chrX (377 aa)
initn: 381 init1: 210 opt: 472 Z-score: 600.2 bits: 119.8 E(32554): 4.1e-27
Smith-Waterman score: 518; 31.9% identity (63.9% similar) in 332 aa overlap (1-302:1-324)
10 20 30 40 50
pF1KB5 MVLLWLTLLLIALP----CLLQTKED--PNPPIT--NLRMKAKAQQLTWDLNRNVTDIEC
:.:: .::: :: :. : : : . :.:. .....:.:: ..:.: .:
CCDS35 MLLLVTSLLLCELPHPAFLLIPEKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKC
10 20 30 40 50 60
60 70 80 90 100
pF1KB5 V---KDADYSMPAVNNSYCQ--FGAISLCEVTNYTVRVANPP--FSTWILFPENSGKPWA
: : ..:. :. : : : : ... :.: . :. .:.: :::. .
CCDS35 FLTDKKNRVVEPRLSNNECSCTFREICLHEGVTFEVHVNTSQRGFQQKLLYP-NSGREGT
70 80 90 100 110
110 120 130 140 150 160
pF1KB5 GAENLTCWIHDVDFLSCSWAVGPGAPADVQYDLYLNVANRRQQYECLHYKTDAQGTRIGC
.:.:..:.:...:...:.:: :: :: :::: ::. ..::.. .: .: :. ::..::
CCDS35 AAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIRNSKRRREIRCPYYIQDS-GTHVGC
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB5 RFDDISRLSSGSQSSHILVRGRSAAFGIPCTDKFVVFSQIEILTPP-NMTAKCNKTHSFM
..:..: :.: ...:: : : .:: :... ..:: ..:: :.:..:: :: ..
CCDS35 HLDNLSGLTS---RNYFLVNGTSREIGIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLV
180 190 200 210 220 230
230 240 250 260 270
pF1KB5 HWKMRSHFNR----KFRYELQIQKR-MQP-------VITEQVRDRTSFQLLNP-GTYTVQ
.::. ... :.:.:..... :: .. ....: .: .: . ..:.
CCDS35 RWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLENRYNFPSSEPRAKHSVK
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB5 IRARE-RVYEFLSAWSTPQRFECDQEEGANTRAWRTSLLIALGTLLALVCVFVICRRYLV
::: . :. .. :.:: . .: :. : . :
CCDS35 IRAADVRILNW-SSWS--EAIEFDHLGGIHPRGRERLPRRGLDREGNYLRPRGCRNGMDI
300 310 320 330 340 350
340 350 360 370
pF1KB5 MQRLFPRIPHMKDPIGDSFQNDKLVVWEAGKAGLEECLVTEVQVVQKT
CCDS35 SASATRGNCFLDDAVNLYIIFYVFI
360 370
>>CCDS35190.1 CSF2RA gene_id:1438|Hs108|chrY (377 aa)
initn: 381 init1: 210 opt: 472 Z-score: 600.2 bits: 119.8 E(32554): 4.1e-27
Smith-Waterman score: 518; 31.9% identity (63.9% similar) in 332 aa overlap (1-302:1-324)
10 20 30 40 50
pF1KB5 MVLLWLTLLLIALP----CLLQTKED--PNPPIT--NLRMKAKAQQLTWDLNRNVTDIEC
:.:: .::: :: :. : : : . :.:. .....:.:: ..:.: .:
CCDS35 MLLLVTSLLLCELPHPAFLLIPEKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKC
10 20 30 40 50 60
60 70 80 90 100
pF1KB5 V---KDADYSMPAVNNSYCQ--FGAISLCEVTNYTVRVANPP--FSTWILFPENSGKPWA
: : ..:. :. : : : : ... :.: . :. .:.: :::. .
CCDS35 FLTDKKNRVVEPRLSNNECSCTFREICLHEGVTFEVHVNTSQRGFQQKLLYP-NSGREGT
70 80 90 100 110
110 120 130 140 150 160
pF1KB5 GAENLTCWIHDVDFLSCSWAVGPGAPADVQYDLYLNVANRRQQYECLHYKTDAQGTRIGC
.:.:..:.:...:...:.:: :: :: :::: ::. ..::.. .: .: :. ::..::
CCDS35 AAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIRNSKRRREIRCPYYIQDS-GTHVGC
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB5 RFDDISRLSSGSQSSHILVRGRSAAFGIPCTDKFVVFSQIEILTPP-NMTAKCNKTHSFM
..:..: :.: ...:: : : .:: :... ..:: ..:: :.:..:: :: ..
CCDS35 HLDNLSGLTS---RNYFLVNGTSREIGIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLV
180 190 200 210 220 230
230 240 250 260 270
pF1KB5 HWKMRSHFNR----KFRYELQIQKR-MQP-------VITEQVRDRTSFQLLNP-GTYTVQ
.::. ... :.:.:..... :: .. ....: .: .: . ..:.
CCDS35 RWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLENRYNFPSSEPRAKHSVK
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB5 IRARE-RVYEFLSAWSTPQRFECDQEEGANTRAWRTSLLIALGTLLALVCVFVICRRYLV
::: . :. .. :.:: . .: :. : . :
CCDS35 IRAADVRILNW-SSWS--EAIEFDHLGGIHPRGRERLPRRGLDREGNYLRPRGCRNGMDI
300 310 320 330 340 350
340 350 360 370
pF1KB5 MQRLFPRIPHMKDPIGDSFQNDKLVVWEAGKAGLEECLVTEVQVVQKT
CCDS35 SASATRGNCFLDDAVNLYIIFYVFI
360 370
378 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:26:09 2016 done: Fri Nov 4 03:26:10 2016
Total Scan time: 2.690 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]