FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5227, 494 aa
  1>>>pF1KB5227 494 - 494 aa - 494 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.6152+/-0.00117; mu= -22.0695+/- 0.071
 mean_var=598.2768+/-127.054, 0's: 0 Z-trim(117.7): 80  B-trim: 640 in 2/51
 Lambda= 0.052435
 statistics sampled from 18358 (18438) to 18358 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.566), width:  16
 Scan time:  3.530

The best scores are:                                      opt bits E(32554)
CCDS42294.1 ZNF207 gene_id:7756|Hs108|chr17        ( 494) 3561 283.7 3.1e-76
CCDS11271.1 ZNF207 gene_id:7756|Hs108|chr17        ( 478) 2232 183.2 5.5e-46
CCDS32614.1 ZNF207 gene_id:7756|Hs108|chr17        ( 463) 2142 176.4   6e-44


>>CCDS42294.1 ZNF207 gene_id:7756|Hs108|chr17             (494 aa)
 initn: 3561 init1: 3561 opt: 3561  Z-score: 1482.3  bits: 283.7 E(32554): 3.1e-76
Smith-Waterman score: 3561; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:1-494)

               10        20        30        40        50        60
pF1KB5 MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 MPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 ASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 MMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPP
              430       440       450       460       470       480

              490    
pF1KB5 MGMRPPVMSQGGRY
       ::::::::::::::
CCDS42 MGMRPPVMSQGGRY
              490    

>>CCDS11271.1 ZNF207 gene_id:7756|Hs108|chr17             (478 aa)
 initn: 2088 init1: 2088 opt: 2232  Z-score: 939.1  bits: 183.2 E(32554): 5.5e-46
Smith-Waterman score: 3402; 96.8% identity (96.8% similar) in 494 aa overlap (1-494:1-478)

               10        20        30        40        50        60
pF1KB5 MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 MPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQA
       ::::                ::::::::::::::::::::::::::::::::::::::::
CCDS11 MPPG----------------MMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQA
                              190       200       210       220    

              250       260       270       280       290       300
pF1KB5 QAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKA
          230       240       250       260       270       280    

              310       320       330       340       350       360
pF1KB5 LFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPA
          290       300       310       320       330       340    

              370       380       390       400       410       420
pF1KB5 ASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGG
          350       360       370       380       390       400    

              430       440       450       460       470       480
pF1KB5 MMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPP
          410       420       430       440       450       460    

              490    
pF1KB5 MGMRPPVMSQGGRY
       ::::::::::::::
CCDS11 MGMRPPVMSQGGRY
          470        

>>CCDS32614.1 ZNF207 gene_id:7756|Hs108|chr17             (463 aa)
 initn: 2047 init1: 2047 opt: 2142  Z-score: 902.5  bits: 176.4 E(32554): 6e-44
Smith-Waterman score: 3310; 93.7% identity (93.7% similar) in 494 aa overlap (1-494:1-463)

               10        20        30        40        50        60
pF1KB5 MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 MPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKA
       ::::::::::::::::::::::::::::::::::::                        
CCDS32 QAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQ------------------------
              250       260       270                              

              310       320       330       340       350       360
pF1KB5 LFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPA
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 -------AQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPA
               280       290       300       310       320         

              370       380       390       400       410       420
pF1KB5 ASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGG
     330       340       350       360       370       380         

              430       440       450       460       470       480
pF1KB5 MMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPP
     390       400       410       420       430       440         

              490    
pF1KB5 MGMRPPVMSQGGRY
       ::::::::::::::
CCDS32 MGMRPPVMSQGGRY
     450       460   




494 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:22:52 2016 done: Thu Nov  3 16:22:52 2016
 Total Scan time:  3.530 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]