FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5231, 710 aa
  1>>>pF1KB5231 710 - 710 aa - 710 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0281+/-0.00136; mu= 5.0076+/- 0.084
 mean_var=573.5512+/-114.245, 0's: 0 Z-trim(113.4): 84  B-trim: 0 in 0/55
 Lambda= 0.053554
 statistics sampled from 13976 (14040) to 13976 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.431), width:  16
 Scan time:  4.460

The best scores are:                                      opt bits E(32554)
CCDS33397.1 NCL gene_id:4691|Hs108|chr2            ( 710) 4624 372.8  1e-102


>>CCDS33397.1 NCL gene_id:4691|Hs108|chr2                 (710 aa)
 initn: 4624 init1: 4624 opt: 4624  Z-score: 1957.8  bits: 372.8 E(32554): 1e-102
Smith-Waterman score: 4624; 100.0% identity (100.0% similar) in 710 aa overlap (1-710:1-710)

               10        20        30        40        50        60
pF1KB5 MVKLAKAGKNQGDPKKMAPPPKEVEEDSEDEEMSEDEEDDSSGEEVVIPQKKGKKAAATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MVKLAKAGKNQGDPKKMAPPPKEVEEDSEDEEMSEDEEDDSSGEEVVIPQKKGKKAAATS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 AKKVVVSPTKKVAVATPAKKAAVTPGKKAAATPAKKTVTPAKAVTTPGKKGATPGKALVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AKKVVVSPTKKVAVATPAKKAAVTPGKKAAATPAKKTVTPAKAVTTPGKKGATPGKALVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 TPGKKGAAIPAKGAKNGKNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TPGKKGAAIPAKGAKNGKNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 APASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 APASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 DDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 TEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EKALELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EKALELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 LVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNST
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEAL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 NSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARI
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGR
              610       620       630       640       650       660

              670       680       690       700       710
pF1KB5 GGFGGRGGGRGGRGGFGGRGRGGFGGRGGFRGGRGGGGDHKPQGKKTKFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GGFGGRGGGRGGRGGFGGRGRGGFGGRGGFRGGRGGGGDHKPQGKKTKFE
              670       680       690       700       710




710 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:23:29 2016 done: Thu Nov  3 16:23:29 2016
 Total Scan time:  4.460 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]