FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5231, 710 aa
  1>>>pF1KB5231 710 - 710 aa - 710 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0498+/-0.00057; mu= 5.6158+/- 0.037
 mean_var=651.9216+/-128.914, 0's: 0 Z-trim(121.4): 81  B-trim: 0 in 0/60
 Lambda= 0.050232
 statistics sampled from 37917 (38048) to 37917 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.446), width:  16
 Scan time: 14.390

The best scores are:                                      opt bits E(85289)
NP_005372 (OMIM: 164035) nucleolin [Homo sapiens]  ( 710) 4624 350.8   1e-95
NP_006796 (OMIM: 609409) heterogeneous nuclear rib ( 305)  354 40.8  0.0096


>>NP_005372 (OMIM: 164035) nucleolin [Homo sapiens]       (710 aa)
 initn: 4624 init1: 4624 opt: 4624  Z-score: 1839.3  bits: 350.8 E(85289): 1e-95
Smith-Waterman score: 4624; 100.0% identity (100.0% similar) in 710 aa overlap (1-710:1-710)

               10        20        30        40        50        60
pF1KB5 MVKLAKAGKNQGDPKKMAPPPKEVEEDSEDEEMSEDEEDDSSGEEVVIPQKKGKKAAATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MVKLAKAGKNQGDPKKMAPPPKEVEEDSEDEEMSEDEEDDSSGEEVVIPQKKGKKAAATS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 AKKVVVSPTKKVAVATPAKKAAVTPGKKAAATPAKKTVTPAKAVTTPGKKGATPGKALVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AKKVVVSPTKKVAVATPAKKAAVTPGKKAAATPAKKTVTPAKAVTTPGKKGATPGKALVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 TPGKKGAAIPAKGAKNGKNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TPGKKGAAIPAKGAKNGKNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 APASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 APASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 DDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 TEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EKALELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EKALELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 LVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNST
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEAL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 NSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARI
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGR
              610       620       630       640       650       660

              670       680       690       700       710
pF1KB5 GGFGGRGGGRGGRGGFGGRGRGGFGGRGGFRGGRGGGGDHKPQGKKTKFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GGFGGRGGGRGGRGGFGGRGRGGFGGRGGFRGGRGGGGDHKPQGKKTKFE
              670       680       690       700       710

>>NP_006796 (OMIM: 609409) heterogeneous nuclear ribonuc  (305 aa)
 initn: 258 init1: 158 opt: 354  Z-score: 170.2  bits: 40.8 E(85289): 0.0096
Smith-Waterman score: 354; 33.3% identity (65.3% similar) in 225 aa overlap (488-697:9-230)

       460       470       480       490       500           510   
pF1KB5 SISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK----ATFIK
                                     : ...:. ...:  :.  ::     .  . 
NP_006                       MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVV
                                     10        20        30        

           520       530       540       550       560          570
pF1KB5 VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR---GSPNARSQP
       : . :. .:. ..:. ... :.:  :. . . . ..: ...:.    :   . :.:... 
NP_006 VVNPQTKRSRCFGFVTYSNVEEADAAMAA-SPHAVDGNTVELKRAVSREDSARPGAHAK-
       40        50        60         70        80        90       

              580       590          600       610       620       
pF1KB5 SKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAK
        : ::: ::. :..:  : : :.  :.: .:.:..:...:...::::: :... ::    
NP_006 VKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNH-DAADKA
        100       110       120       130       140        150     

       630       640       650        660        670          680  
pF1KB5 EAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGG-RGGFGGRGG-GRGG---RGGFGGRGRG
        ...   :.:..: .  : :: .   :: ::: :.. ::::: ::::   ..:..  : :
NP_006 AVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGG
         160       170       180       190       200       210     

            690       700       710                                
pF1KB5 GFGGRGGFRGGRGGGGDHKPQGKKTKFE                                
       :... ::. :: :::                                             
NP_006 GYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGG
         220       230       240       250       260       270     




710 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:23:30 2016 done: Thu Nov  3 16:23:32 2016
 Total Scan time: 14.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]