FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5234, 534 aa
  1>>>pF1KB5234 534 - 534 aa - 534 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3552+/-0.000828; mu= 11.6415+/- 0.051
 mean_var=142.0869+/-28.728, 0's: 0 Z-trim(112.4): 7  B-trim: 762 in 1/54
 Lambda= 0.107596
 statistics sampled from 13141 (13147) to 13141 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.404), width:  16
 Scan time:  3.520

The best scores are:                                      opt bits E(32554)
CCDS11356.1 PSMD3 gene_id:5709|Hs108|chr17         ( 534) 3463 548.8 5.6e-156


>>CCDS11356.1 PSMD3 gene_id:5709|Hs108|chr17              (534 aa)
 initn: 3463 init1: 3463 opt: 3463  Z-score: 2913.7  bits: 548.8 E(32554): 5.6e-156
Smith-Waterman score: 3463; 100.0% identity (100.0% similar) in 534 aa overlap (1-534:1-534)

               10        20        30        40        50        60
pF1KB5 MKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 EHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVQGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVQGF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 FTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIFMMNSKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIFMMNSKR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 RHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 EYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 FLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI
              430       440       450       460       470       480

              490       500       510       520       530    
pF1KB5 SFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP
              490       500       510       520       530    




534 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:24:10 2016 done: Thu Nov  3 16:24:10 2016
 Total Scan time:  3.520 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]