Result of FASTA (omim) for
pF1KB5236
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5236, 354 aa
1>>>pF1KB5236 354 - 354 aa - 354 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4861+/-0.000368; mu= 15.1141+/- 0.023
mean_var=73.6148+/-15.311, 0's: 0 Z-trim(112.9): 96 B-trim: 40 in 1/55
Lambda= 0.149483
statistics sampled from 21933 (22031) to 21933 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.63), E-opt: 0.2 (0.258), width: 16
Scan time: 7.380
The best scores are: opt bits E(85289)
XP_011541470 (OMIM: 115435) PREDICTED: hyaluronan ( 354) 2486 545.6 5.9e-155
XP_016864540 (OMIM: 115435) PREDICTED: hyaluronan ( 354) 2486 545.6 5.9e-155
NP_001875 (OMIM: 115435) hyaluronan and proteoglyc ( 354) 2486 545.6 5.9e-155
XP_016864541 (OMIM: 115435) PREDICTED: hyaluronan ( 354) 2486 545.6 5.9e-155
XP_016864543 (OMIM: 115435) PREDICTED: hyaluronan ( 353) 2469 542.0 7.5e-154
XP_016864542 (OMIM: 115435) PREDICTED: hyaluronan ( 353) 2469 542.0 7.5e-154
NP_940819 (OMIM: 600347) brevican core protein iso ( 671) 804 183.1 1.6e-45
XP_011508168 (OMIM: 600347) PREDICTED: brevican co ( 911) 804 183.2 2e-45
NP_068767 (OMIM: 600347) brevican core protein iso ( 911) 804 183.2 2e-45
XP_016857536 (OMIM: 600347) PREDICTED: brevican co ( 956) 804 183.2 2.1e-45
NP_001119808 (OMIM: 118661,143200) versican core p ( 655) 780 177.9 5.6e-44
NP_001157570 (OMIM: 118661,143200) versican core p (1642) 780 178.1 1.2e-43
NP_001157569 (OMIM: 118661,143200) versican core p (2409) 780 178.2 1.6e-43
NP_004376 (OMIM: 118661,143200) versican core prot (3396) 780 178.3 2.1e-43
NP_004377 (OMIM: 600826) neurocan core protein pre (1321) 759 173.5 2.3e-42
NP_001126 (OMIM: 155760,165800,608361,612813) aggr (2431) 760 173.9 3.2e-42
XP_011519616 (OMIM: 155760,165800,608361,612813) P (2492) 760 173.9 3.3e-42
XP_016877476 (OMIM: 155760,165800,608361,612813) P (2515) 760 173.9 3.3e-42
NP_037359 (OMIM: 155760,165800,608361,612813) aggr (2530) 760 173.9 3.4e-42
XP_011519615 (OMIM: 155760,165800,608361,612813) P (2530) 760 173.9 3.4e-42
XP_016877474 (OMIM: 155760,165800,608361,612813) P (2553) 760 173.9 3.4e-42
XP_016877475 (OMIM: 155760,165800,608361,612813) P (2553) 760 173.9 3.4e-42
XP_006720482 (OMIM: 155760,165800,608361,612813) P (2568) 760 173.9 3.4e-42
XP_011536844 (OMIM: 608561) PREDICTED: stabilin-2 (1238) 231 59.7 4.1e-08
XP_011536843 (OMIM: 608561) PREDICTED: stabilin-2 (1684) 231 59.7 5.3e-08
XP_011536841 (OMIM: 608561) PREDICTED: stabilin-2 (1994) 231 59.8 6.1e-08
NP_060034 (OMIM: 608561) stabilin-2 precursor [Hom (2551) 231 59.8 7.4e-08
NP_009046 (OMIM: 600410) tumor necrosis factor-ind ( 277) 218 56.5 8.4e-08
XP_016861492 (OMIM: 608560) PREDICTED: stabilin-1 (2555) 229 59.4 1e-07
XP_016861491 (OMIM: 608560) PREDICTED: stabilin-1 (2565) 229 59.4 1e-07
XP_005265031 (OMIM: 608560) PREDICTED: stabilin-1 (2569) 229 59.4 1e-07
NP_055951 (OMIM: 608560) stabilin-1 precursor [Hom (2570) 229 59.4 1e-07
XP_016861490 (OMIM: 608560) PREDICTED: stabilin-1 (2583) 229 59.4 1e-07
XP_016861489 (OMIM: 608560) PREDICTED: stabilin-1 (2589) 229 59.4 1e-07
XP_016861488 (OMIM: 608560) PREDICTED: stabilin-1 (2590) 229 59.4 1e-07
XP_005265030 (OMIM: 608560) PREDICTED: stabilin-1 (2595) 229 59.4 1e-07
XP_016861487 (OMIM: 608560) PREDICTED: stabilin-1 (2615) 229 59.4 1e-07
NP_006682 (OMIM: 605702) lymphatic vessel endothel ( 322) 155 42.9 0.0012
NP_005805 (OMIM: 602171) cell surface A33 antigen ( 319) 150 41.8 0.0024
NP_001171760 (OMIM: 300353) V-set and immunoglobul ( 227) 147 41.1 0.0029
XP_016884740 (OMIM: 300353) PREDICTED: V-set and i ( 253) 147 41.1 0.0032
NP_001093901 (OMIM: 300353) V-set and immunoglobul ( 305) 147 41.2 0.0037
NP_001171759 (OMIM: 300353) V-set and immunoglobul ( 321) 147 41.2 0.0039
NP_001244332 (OMIM: 300353) V-set and immunoglobul ( 347) 147 41.2 0.0041
NP_009199 (OMIM: 300353) V-set and immunoglobulin ( 399) 147 41.2 0.0046
XP_011518376 (OMIM: 613714) PREDICTED: natural cyt ( 425) 146 41.1 0.0056
XP_011518374 (OMIM: 613714) PREDICTED: natural cyt ( 425) 146 41.1 0.0056
XP_011518375 (OMIM: 613714) PREDICTED: natural cyt ( 425) 146 41.1 0.0056
XP_011518377 (OMIM: 613714) PREDICTED: natural cyt ( 425) 146 41.1 0.0056
NP_001189368 (OMIM: 613714) natural cytotoxicity t ( 454) 146 41.1 0.0059
>>XP_011541470 (OMIM: 115435) PREDICTED: hyaluronan and (354 aa)
initn: 2486 init1: 2486 opt: 2486 Z-score: 2902.9 bits: 545.6 E(85289): 5.9e-155
Smith-Waterman score: 2486; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354)
10 20 30 40 50 60
pF1KB5 MKSLLLLVLISICWADHLSDNYTLDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKSLLLLVLISICWADHLSDNYTLDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 CKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 WDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILG
250 260 270 280 290 300
310 320 330 340 350
pF1KB5 YDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRAYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRAYN
310 320 330 340 350
>>XP_016864540 (OMIM: 115435) PREDICTED: hyaluronan and (354 aa)
initn: 2486 init1: 2486 opt: 2486 Z-score: 2902.9 bits: 545.6 E(85289): 5.9e-155
Smith-Waterman score: 2486; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354)
10 20 30 40 50 60
pF1KB5 MKSLLLLVLISICWADHLSDNYTLDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKSLLLLVLISICWADHLSDNYTLDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 CKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 WDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILG
250 260 270 280 290 300
310 320 330 340 350
pF1KB5 YDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRAYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRAYN
310 320 330 340 350
>>NP_001875 (OMIM: 115435) hyaluronan and proteoglycan l (354 aa)
initn: 2486 init1: 2486 opt: 2486 Z-score: 2902.9 bits: 545.6 E(85289): 5.9e-155
Smith-Waterman score: 2486; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354)
10 20 30 40 50 60
pF1KB5 MKSLLLLVLISICWADHLSDNYTLDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKSLLLLVLISICWADHLSDNYTLDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 CKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 WDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILG
250 260 270 280 290 300
310 320 330 340 350
pF1KB5 YDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRAYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRAYN
310 320 330 340 350
>>XP_016864541 (OMIM: 115435) PREDICTED: hyaluronan and (354 aa)
initn: 2486 init1: 2486 opt: 2486 Z-score: 2902.9 bits: 545.6 E(85289): 5.9e-155
Smith-Waterman score: 2486; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354)
10 20 30 40 50 60
pF1KB5 MKSLLLLVLISICWADHLSDNYTLDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKSLLLLVLISICWADHLSDNYTLDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 CKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 WDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILG
250 260 270 280 290 300
310 320 330 340 350
pF1KB5 YDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRAYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRAYN
310 320 330 340 350
>>XP_016864543 (OMIM: 115435) PREDICTED: hyaluronan and (353 aa)
initn: 2467 init1: 2259 opt: 2469 Z-score: 2883.1 bits: 542.0 E(85289): 7.5e-154
Smith-Waterman score: 2469; 99.7% identity (99.7% similar) in 354 aa overlap (1-354:1-353)
10 20 30 40 50 60
pF1KB5 MKSLLLLVLISICWADHLSDNYTLDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLP
::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
XP_016 MKSLLLLVLISICWADHLSDNYTLDHDRAIHIQ-ENGPHLLVEAEQAKVFSHRGGNVTLP
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 CKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 DASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQA
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 CLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGF
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB5 WDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILG
240 250 260 270 280 290
310 320 330 340 350
pF1KB5 YDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRAYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRAYN
300 310 320 330 340 350
>>XP_016864542 (OMIM: 115435) PREDICTED: hyaluronan and (353 aa)
initn: 2467 init1: 2259 opt: 2469 Z-score: 2883.1 bits: 542.0 E(85289): 7.5e-154
Smith-Waterman score: 2469; 99.7% identity (99.7% similar) in 354 aa overlap (1-354:1-353)
10 20 30 40 50 60
pF1KB5 MKSLLLLVLISICWADHLSDNYTLDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLP
::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
XP_016 MKSLLLLVLISICWADHLSDNYTLDHDRAIHIQ-ENGPHLLVEAEQAKVFSHRGGNVTLP
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 CKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 DASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQA
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 CLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGF
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB5 WDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILG
240 250 260 270 280 290
310 320 330 340 350
pF1KB5 YDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRAYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRAYN
300 310 320 330 340 350
>>NP_940819 (OMIM: 600347) brevican core protein isoform (671 aa)
initn: 675 init1: 469 opt: 804 Z-score: 938.4 bits: 183.1 E(85289): 1.6e-45
Smith-Waterman score: 804; 42.6% identity (67.4% similar) in 310 aa overlap (54-351:50-354)
30 40 50 60 70 80
pF1KB5 LDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLPCK--FYRDPTAFGSGIHKIRIKW
:: .:.::. . : : . . . . :.::
NP_940 ALADVLEGDSSEDRAFRVRIAGDAPLQGVLGGALTIPCHVHYLRPPPSRRAVLGSPRVKW
20 30 40 50 60 70
90 100 110 120 130
pF1KB5 TKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKG--GSDSDASLVITDLTLEDYGRYKC
: :. .:..:.:. : . :. .:. :: : . .: .:.::....: .: : :.:
NP_940 TFLSRG--REAEVLVARGVRVKVNEAYRFRVALPAYPASLTDVSLALSELRPNDSGIYRC
80 90 100 110 120 130
140 150 160 170 180 190
pF1KB5 EVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWR
:: .:..:.. .: . ..:::: : .:: ..: ::.:: : ::. .::: :.
NP_940 EVQHGIDDSSDAVEVKVKGVVFLYREGSARYAFSFSGAQEACARIGAHIATPEQLYAAYL
140 150 160 170 180 190
200 210 220 230 240 250
pF1KB5 GGLDWCNAGWLSDGSVQYPITKPREPC-GGQNTVPGVRNYGFWDKDKSRYDVFCFTSNFN
:: . :.:::::: .:.::: ::: : : .. ::::::: : : . :::.:.. ..:
NP_940 GGYEQCDAGWLSDQTVRYPIQTPREACYGDMDGFPGVRNYGVVDPD-DLYDVYCYAEDLN
200 210 220 230 240 250
260 270 280 290 300 310
pF1KB5 GRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILGYDRCDAGWLADGSVRYPI
:... : ::: .:: : . ::.:: .::..::: : :.:. ::::::::::::
NP_940 GELFLGDPPEKLTLEEARAYCQERGAEIATTGQLYAAWDG-GLDHCSPGWLADGSVRYPI
260 270 280 290 300 310
320 330 340 350
pF1KB5 SRPRRRCSPTEAAVRFV-------GFPDKKHKLYGVYCFRAYN
: .::. .:. . :::.: :. ..:::::
NP_940 VTPSQRCGGGLPGVKTLFLFPNQTGFPNK-HSRFNVYCFRDSAQPSAIPEASNPASNPAS
320 330 340 350 360 370
NP_940 DGLEAIVTVTETLEELQLPQEATESESRGAIYSIPIMEDGGGGSSTPEDPAEAPRTLLEF
380 390 400 410 420 430
>>XP_011508168 (OMIM: 600347) PREDICTED: brevican core p (911 aa)
initn: 675 init1: 469 opt: 804 Z-score: 936.4 bits: 183.2 E(85289): 2e-45
Smith-Waterman score: 804; 42.6% identity (67.4% similar) in 310 aa overlap (54-351:50-354)
30 40 50 60 70 80
pF1KB5 LDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLPCK--FYRDPTAFGSGIHKIRIKW
:: .:.::. . : : . . . . :.::
XP_011 ALADVLEGDSSEDRAFRVRIAGDAPLQGVLGGALTIPCHVHYLRPPPSRRAVLGSPRVKW
20 30 40 50 60 70
90 100 110 120 130
pF1KB5 TKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKG--GSDSDASLVITDLTLEDYGRYKC
: :. .:..:.:. : . :. .:. :: : . .: .:.::....: .: : :.:
XP_011 TFLSRG--REAEVLVARGVRVKVNEAYRFRVALPAYPASLTDVSLALSELRPNDSGIYRC
80 90 100 110 120 130
140 150 160 170 180 190
pF1KB5 EVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWR
:: .:..:.. .: . ..:::: : .:: ..: ::.:: : ::. .::: :.
XP_011 EVQHGIDDSSDAVEVKVKGVVFLYREGSARYAFSFSGAQEACARIGAHIATPEQLYAAYL
140 150 160 170 180 190
200 210 220 230 240 250
pF1KB5 GGLDWCNAGWLSDGSVQYPITKPREPC-GGQNTVPGVRNYGFWDKDKSRYDVFCFTSNFN
:: . :.:::::: .:.::: ::: : : .. ::::::: : : . :::.:.. ..:
XP_011 GGYEQCDAGWLSDQTVRYPIQTPREACYGDMDGFPGVRNYGVVDPD-DLYDVYCYAEDLN
200 210 220 230 240 250
260 270 280 290 300 310
pF1KB5 GRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILGYDRCDAGWLADGSVRYPI
:... : ::: .:: : . ::.:: .::..::: : :.:. ::::::::::::
XP_011 GELFLGDPPEKLTLEEARAYCQERGAEIATTGQLYAAWDG-GLDHCSPGWLADGSVRYPI
260 270 280 290 300 310
320 330 340 350
pF1KB5 SRPRRRCSPTEAAVRFV-------GFPDKKHKLYGVYCFRAYN
: .::. .:. . :::.: :. ..:::::
XP_011 VTPSQRCGGGLPGVKTLFLFPNQTGFPNK-HSRFNVYCFRDSAQPSAIPEASNPASNPAS
320 330 340 350 360 370
XP_011 DGLEAIVTVTETLEELQLPQEATESESRGAIYSIPIMEDGGGGSSTPEDPAEAPRTLLEF
380 390 400 410 420 430
>>NP_068767 (OMIM: 600347) brevican core protein isoform (911 aa)
initn: 675 init1: 469 opt: 804 Z-score: 936.4 bits: 183.2 E(85289): 2e-45
Smith-Waterman score: 804; 42.6% identity (67.4% similar) in 310 aa overlap (54-351:50-354)
30 40 50 60 70 80
pF1KB5 LDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLPCK--FYRDPTAFGSGIHKIRIKW
:: .:.::. . : : . . . . :.::
NP_068 ALADVLEGDSSEDRAFRVRIAGDAPLQGVLGGALTIPCHVHYLRPPPSRRAVLGSPRVKW
20 30 40 50 60 70
90 100 110 120 130
pF1KB5 TKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKG--GSDSDASLVITDLTLEDYGRYKC
: :. .:..:.:. : . :. .:. :: : . .: .:.::....: .: : :.:
NP_068 TFLSRG--REAEVLVARGVRVKVNEAYRFRVALPAYPASLTDVSLALSELRPNDSGIYRC
80 90 100 110 120 130
140 150 160 170 180 190
pF1KB5 EVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWR
:: .:..:.. .: . ..:::: : .:: ..: ::.:: : ::. .::: :.
NP_068 EVQHGIDDSSDAVEVKVKGVVFLYREGSARYAFSFSGAQEACARIGAHIATPEQLYAAYL
140 150 160 170 180 190
200 210 220 230 240 250
pF1KB5 GGLDWCNAGWLSDGSVQYPITKPREPC-GGQNTVPGVRNYGFWDKDKSRYDVFCFTSNFN
:: . :.:::::: .:.::: ::: : : .. ::::::: : : . :::.:.. ..:
NP_068 GGYEQCDAGWLSDQTVRYPIQTPREACYGDMDGFPGVRNYGVVDPD-DLYDVYCYAEDLN
200 210 220 230 240 250
260 270 280 290 300 310
pF1KB5 GRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILGYDRCDAGWLADGSVRYPI
:... : ::: .:: : . ::.:: .::..::: : :.:. ::::::::::::
NP_068 GELFLGDPPEKLTLEEARAYCQERGAEIATTGQLYAAWDG-GLDHCSPGWLADGSVRYPI
260 270 280 290 300 310
320 330 340 350
pF1KB5 SRPRRRCSPTEAAVRFV-------GFPDKKHKLYGVYCFRAYN
: .::. .:. . :::.: :. ..:::::
NP_068 VTPSQRCGGGLPGVKTLFLFPNQTGFPNK-HSRFNVYCFRDSAQPSAIPEASNPASNPAS
320 330 340 350 360 370
NP_068 DGLEAIVTVTETLEELQLPQEATESESRGAIYSIPIMEDGGGGSSTPEDPAEAPRTLLEF
380 390 400 410 420 430
>>XP_016857536 (OMIM: 600347) PREDICTED: brevican core p (956 aa)
initn: 675 init1: 469 opt: 804 Z-score: 936.1 bits: 183.2 E(85289): 2.1e-45
Smith-Waterman score: 804; 42.6% identity (67.4% similar) in 310 aa overlap (54-351:95-399)
30 40 50 60 70 80
pF1KB5 LDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLPCK--FYRDPTAFGSGIHKIRIKW
:: .:.::. . : : . . . . :.::
XP_016 ALADVLEGDSSEDRAFRVRIAGDAPLQGVLGGALTIPCHVHYLRPPPSRRAVLGSPRVKW
70 80 90 100 110 120
90 100 110 120 130
pF1KB5 TKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKG--GSDSDASLVITDLTLEDYGRYKC
: :. .:..:.:. : . :. .:. :: : . .: .:.::....: .: : :.:
XP_016 TFLSRG--REAEVLVARGVRVKVNEAYRFRVALPAYPASLTDVSLALSELRPNDSGIYRC
130 140 150 160 170 180
140 150 160 170 180 190
pF1KB5 EVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWR
:: .:..:.. .: . ..:::: : .:: ..: ::.:: : ::. .::: :.
XP_016 EVQHGIDDSSDAVEVKVKGVVFLYREGSARYAFSFSGAQEACARIGAHIATPEQLYAAYL
190 200 210 220 230 240
200 210 220 230 240 250
pF1KB5 GGLDWCNAGWLSDGSVQYPITKPREPC-GGQNTVPGVRNYGFWDKDKSRYDVFCFTSNFN
:: . :.:::::: .:.::: ::: : : .. ::::::: : : . :::.:.. ..:
XP_016 GGYEQCDAGWLSDQTVRYPIQTPREACYGDMDGFPGVRNYGVVDPD-DLYDVYCYAEDLN
250 260 270 280 290 300
260 270 280 290 300 310
pF1KB5 GRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILGYDRCDAGWLADGSVRYPI
:... : ::: .:: : . ::.:: .::..::: : :.:. ::::::::::::
XP_016 GELFLGDPPEKLTLEEARAYCQERGAEIATTGQLYAAWDG-GLDHCSPGWLADGSVRYPI
310 320 330 340 350 360
320 330 340 350
pF1KB5 SRPRRRCSPTEAAVRFV-------GFPDKKHKLYGVYCFRAYN
: .::. .:. . :::.: :. ..:::::
XP_016 VTPSQRCGGGLPGVKTLFLFPNQTGFPNK-HSRFNVYCFRDSAQPSAIPEASNPASNPAS
370 380 390 400 410
XP_016 DGLEAIVTVTETLEELQLPQEATESESRGAIYSIPIMEDGGGGSSTPEDPAEAPRTLLEF
420 430 440 450 460 470
354 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:31:14 2016 done: Sat Nov 5 06:31:15 2016
Total Scan time: 7.380 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]