FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5237, 295 aa
  1>>>pF1KB5237 295 - 295 aa - 295 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9663+/-0.000972; mu= 17.3405+/- 0.058
 mean_var=65.0723+/-12.691, 0's: 0 Z-trim(104.5): 27  B-trim: 0 in 0/48
 Lambda= 0.158992
 statistics sampled from 7889 (7910) to 7889 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.614), E-opt: 0.2 (0.243), width:  16
 Scan time:  1.960

The best scores are:                                      opt bits E(32554)
CCDS750.1 F3 gene_id:2152|Hs108|chr1               ( 295) 1940 453.8 6.9e-128
CCDS53345.1 F3 gene_id:2152|Hs108|chr1             ( 238) 1311 309.5 1.6e-84


>>CCDS750.1 F3 gene_id:2152|Hs108|chr1                    (295 aa)
 initn: 1940 init1: 1940 opt: 1940  Z-score: 2409.5  bits: 453.8 E(32554): 6.9e-128
Smith-Waterman score: 1940; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295)

               10        20        30        40        50        60
pF1KB5 METPAWPRVPRPETAVARTLLLGWVFAQVAGASGTTNTVAAYNLTWKSTNFKTILEWEPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 METPAWPRVPRPETAVARTLLLGWVFAQVAGASGTTNTVAAYNLTWKSTNFKTILEWEPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 PVNQVYTVQISTKSGDWKSKCFYTTDTECDLTDEIVKDVKQTYLARVFSYPAGNVESTGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PVNQVYTVQISTKSGDWKSKCFYTTDTECDLTDEIVKDVKQTYLARVFSYPAGNVESTGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 AGEPLYENSPEFTPYLETNLGQPTIQSFEQVGTKVNVTVEDERTLVRRNNTFLSLRDVFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AGEPLYENSPEFTPYLETNLGQPTIQSFEQVGTKVNVTVEDERTLVRRNNTFLSLRDVFG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 KDLIYTLYYWKSSSSGKKTAKTNTNEFLIDVDKGENYCFSVQAVIPSRTVNRKSTDSPVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KDLIYTLYYWKSSSSGKKTAKTNTNEFLIDVDKGENYCFSVQAVIPSRTVNRKSTDSPVE
              190       200       210       220       230       240

              250       260       270       280       290     
pF1KB5 CMGQEKGEFREIFYIIGAVVFVVIILVIILAISLHKCRKAGVGQSWKENSPLNVS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 CMGQEKGEFREIFYIIGAVVFVVIILVIILAISLHKCRKAGVGQSWKENSPLNVS
              250       260       270       280       290     

>>CCDS53345.1 F3 gene_id:2152|Hs108|chr1                  (238 aa)
 initn: 1311 init1: 1311 opt: 1311  Z-score: 1631.0  bits: 309.5 E(32554): 1.6e-84
Smith-Waterman score: 1311; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)

               10        20        30        40        50        60
pF1KB5 METPAWPRVPRPETAVARTLLLGWVFAQVAGASGTTNTVAAYNLTWKSTNFKTILEWEPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 METPAWPRVPRPETAVARTLLLGWVFAQVAGASGTTNTVAAYNLTWKSTNFKTILEWEPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 PVNQVYTVQISTKSGDWKSKCFYTTDTECDLTDEIVKDVKQTYLARVFSYPAGNVESTGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PVNQVYTVQISTKSGDWKSKCFYTTDTECDLTDEIVKDVKQTYLARVFSYPAGNVESTGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 AGEPLYENSPEFTPYLETNLGQPTIQSFEQVGTKVNVTVEDERTLVRRNNTFLSLRDVFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 AGEPLYENSPEFTPYLETNLGQPTIQSFEQVGTKVNVTVEDERTLVRRNNTFLSLRDVFG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 KDLIYTLYYWKSSSSGKKTAKTNTNEFLIDVDKGENYCFSVQAVIPSRTVNRKSTDSPVE
       ::::::::::::::::::                                          
CCDS53 KDLIYTLYYWKSSSSGKKYSTSLELWYLWSSSLSSSWLYLYTSVERQEWGRAGRRTPH  
              190       200       210       220       230          




295 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:12:15 2016 done: Fri Nov  4 20:12:15 2016
 Total Scan time:  1.960 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]