FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5271, 417 aa
  1>>>pF1KB5271 417 - 417 aa - 417 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5681+/-0.000814; mu= 15.2417+/- 0.049
 mean_var=66.6962+/-13.059, 0's: 0 Z-trim(107.5): 38  B-trim: 0 in 0/51
 Lambda= 0.157045
 statistics sampled from 9557 (9595) to 9557 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.295), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(32554)
CCDS32090.1 ACTR10 gene_id:55860|Hs108|chr14       ( 417) 2774 637.4 7.3e-183
CCDS46414.1 POTEE gene_id:445582|Hs108|chr2        (1075)  258 67.6 6.7e-11


>>CCDS32090.1 ACTR10 gene_id:55860|Hs108|chr14            (417 aa)
 initn: 2774 init1: 2774 opt: 2774  Z-score: 3396.4  bits: 637.4 E(32554): 7.3e-183
Smith-Waterman score: 2774; 100.0% identity (100.0% similar) in 417 aa overlap (1-417:1-417)

               10        20        30        40        50        60
pF1KB5 MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKRAGMPKPVRVVQYNIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKRAGMPKPVRVVQYNIN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TEELYSYLKEFIHILYFRHLLVNPRDRRVVIIESVLCPSHFRETLTRVLFKYFEVPSVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TEELYSYLKEFIHILYFRHLLVNPRDRRVVIIESVLCPSHFRETLTRVLFKYFEVPSVLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 EQCTVDTSVAKEQSLPSVMGSVPEGVLEDIKARTCFVSDLKRGLKIQAAKFNIDGNNERP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EQCTVDTSVAKEQSLPSVMGSVPEGVLEDIKARTCFVSDLKRGLKIQAAKFNIDGNNERP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 SPPPNVDYPLDGEKILHILGSIRDSVVEILFEQDNEEQSVATLILDSLIQCPIDTRKQLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SPPPNVDYPLDGEKILHILGSIRDSVVEILFEQDNEEQSVATLILDSLIQCPIDTRKQLA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 ENLVVIGGTSMLPGFLHRLLAEIRYLVEKPKYKKALGTKTFRIHTPPAKANCVAWLGGAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ENLVVIGGTSMLPGFLHRLLAEIRYLVEKPKYKKALGTKTFRIHTPPAKANCVAWLGGAI
              310       320       330       340       350       360

              370       380       390       400       410       
pF1KB5 FGALQDILGSRSVSKEYYNQTGRIPDWCSLNNPPLEMMFDVGKTQPPLMKRAFSTEK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FGALQDILGSRSVSKEYYNQTGRIPDWCSLNNPPLEMMFDVGKTQPPLMKRAFSTEK
              370       380       390       400       410       

>>CCDS46414.1 POTEE gene_id:445582|Hs108|chr2             (1075 aa)
 initn: 187 init1: 103 opt: 258  Z-score: 309.2  bits: 67.6 E(32554): 6.7e-11
Smith-Waterman score: 423; 26.6% identity (56.3% similar) in 398 aa overlap (12-382:703-1066)

                                  10         20        30        40
pF1KB5                    MPLYEGLGSGGEKTAV-VIDLGEAFTKCGFAGETGPRCIIP
                                     . ::: ::: : .. : ::::. .:: ..:
CCDS46 EKKYLEDIESVKKKNDNLLKALQLNELTMDDDTAVLVIDNGSGMCKAGFAGDDAPRAVFP
            680       690       700       710       720       730  

                                   50        60          70        
pF1KB5 SVIKR-------AGM-------------PKPVRVVQYNINTEELYSY--LKEFIHILYFR
       :.. :       .::              . . ...: ..   . ..  .... :  .. 
CCDS46 SIVGRPRQQGMMGGMHQKESYVGKEAQSKRGILTLKYPMEHGIITNWDDMEKIWHHTFYN
            740       750       760       770       780       790  

       80        90       100       110       120       130        
pF1KB5 HLLVNPRDRRVVIIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMV
       .: : :... ... :. : :.  :: .:...:. :..:.. .: . . .: : : ....:
CCDS46 ELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVPSLYTSGRTTGIV
            800       810       820       830       840       850  

      140       150       160       170       180       190        
pF1KB5 LDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQCTVDTSVAKEQSLPSV
       .: :   . ..:::::  . .    : :.:. :   :   : :.    :..:...     
CCDS46 MDSGDGVTHTVPIYEGNALPHATLRLDLAGRELPDYLMKILTERGYRFTTMAERE-----
            860       870       880       890       900            

      200       210        220       230       240       250       
pF1KB5 MGSVPEGVLEDIKARTCFVS-DLKRGLKIQAAKFNIDGNNERPSPPPNVDYPLDGEKILH
              ...::: . :.:. :... .   :.. ... . : :          ::. :  
CCDS46 -------IVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELP----------DGQVI--
              910       920       930       940                    

       260       270          280       290       300       310    
pF1KB5 ILGSIRDSVVEILFEQ---DNEEQSVATLILDSLIQCPIDTRKQLAENLVVIGGTSMLPG
        .:. :    : ::.      :  ..    ..:...  .: ::.:  : :. :::.: ::
CCDS46 TIGNERFRCPEALFQPCFLGMESCGIHETTFNSIMKSDVDIRKDLYTNTVLSGGTTMYPG
      950       960       970       980       990      1000        

          320       330       340       350       360       370    
pF1KB5 FLHRLLAEIRYLVEKPKYKKALGTKTFRIHTPPAKANCVAWLGGAIFGALQDILGSRSVS
       . ::.  ::  :.  :.. :      .:: .:: .   : :.::.:...:.  . .  .:
CCDS46 MAHRMQKEIAALA--PSMMK------IRIIAPPKRKYSV-WVGGSILASLST-FQQMWIS
     1010      1020              1030       1040      1050         

          380       390       400       410       
pF1KB5 KEYYNQTGRIPDWCSLNNPPLEMMFDVGKTQPPLMKRAFSTEK
       :. :...:                                   
CCDS46 KQEYDESGPSIVHRKCF                          
     1060      1070                               




417 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:33:06 2016 done: Sat Nov  5 06:33:06 2016
 Total Scan time:  2.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]