Result of FASTA (omim) for
pF1KB5317
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5317, 392 aa
1>>>pF1KB5317 392 - 392 aa - 392 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.5086+/-0.000401; mu= 2.2318+/- 0.025
mean_var=181.3386+/-36.205, 0's: 0 Z-trim(118.1): 7 B-trim: 287 in 1/52
Lambda= 0.095242
statistics sampled from 30784 (30791) to 30784 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.361), width: 16
Scan time: 9.820
The best scores are: opt bits E(85289)
NP_005094 (OMIM: 604825) fasciculation and elongat ( 392) 2551 362.8 8.2e-100
XP_005271792 (OMIM: 604825) PREDICTED: fasciculati ( 392) 2551 362.8 8.2e-100
XP_005271791 (OMIM: 604825) PREDICTED: fasciculati ( 392) 2551 362.8 8.2e-100
NP_001036013 (OMIM: 604826) fasciculation and elon ( 380) 917 138.2 3.1e-32
XP_006712216 (OMIM: 604826) PREDICTED: fasciculati ( 279) 808 123.2 7.8e-28
NP_072043 (OMIM: 604825) fasciculation and elongat ( 104) 695 107.4 1.6e-23
NP_005093 (OMIM: 604826) fasciculation and elongat ( 353) 499 80.8 5.7e-15
>>NP_005094 (OMIM: 604825) fasciculation and elongation (392 aa)
initn: 2551 init1: 2551 opt: 2551 Z-score: 1912.9 bits: 362.8 E(85289): 8.2e-100
Smith-Waterman score: 2551; 100.0% identity (100.0% similar) in 392 aa overlap (1-392:1-392)
10 20 30 40 50 60
pF1KB5 MEAPLVSLDEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MEAPLVSLDEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSME
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 DLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQDEEVWDALTDNYIPSLSED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQDEEVWDALTDNYIPSLSED
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 WRDPNIEALNGNCSDTEIHEKEEEEFNEKSENDSGINEEPLLTADQVIEEIEEMMQNSPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 WRDPNIEALNGNCSDTEIHEKEEEEFNEKSENDSGINEEPLLTADQVIEEIEEMMQNSPD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PEEEEEVLEEEDGGETSSQADSVLLQEMQALTQTFNNNWSYEGLRHMSGSELTELLDQVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PEEEEEVLEEEDGGETSSQADSVLLQEMQALTQTFNNNWSYEGLRHMSGSELTELLDQVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 GAIRDFSEELVQQLARRDELEFEKEVKNSFITVLIEVQNKQKEQRELMKKRRKEKGLSLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GAIRDFSEELVQQLARRDELEFEKEVKNSFITVLIEVQNKQKEQRELMKKRRKEKGLSLQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 SSRIEKGNQMPLKRFSMEGISNILQSGIRQTFGSSGTDKQYLNTVIPYEKKASPPSVEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SSRIEKGNQMPLKRFSMEGISNILQSGIRQTFGSSGTDKQYLNTVIPYEKKASPPSVEDL
310 320 330 340 350 360
370 380 390
pF1KB5 QMLTNILFAMKEDNEKVPTLLTDYILKVLCPT
::::::::::::::::::::::::::::::::
NP_005 QMLTNILFAMKEDNEKVPTLLTDYILKVLCPT
370 380 390
>>XP_005271792 (OMIM: 604825) PREDICTED: fasciculation a (392 aa)
initn: 2551 init1: 2551 opt: 2551 Z-score: 1912.9 bits: 362.8 E(85289): 8.2e-100
Smith-Waterman score: 2551; 100.0% identity (100.0% similar) in 392 aa overlap (1-392:1-392)
10 20 30 40 50 60
pF1KB5 MEAPLVSLDEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEAPLVSLDEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSME
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 DLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQDEEVWDALTDNYIPSLSED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQDEEVWDALTDNYIPSLSED
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 WRDPNIEALNGNCSDTEIHEKEEEEFNEKSENDSGINEEPLLTADQVIEEIEEMMQNSPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WRDPNIEALNGNCSDTEIHEKEEEEFNEKSENDSGINEEPLLTADQVIEEIEEMMQNSPD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PEEEEEVLEEEDGGETSSQADSVLLQEMQALTQTFNNNWSYEGLRHMSGSELTELLDQVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PEEEEEVLEEEDGGETSSQADSVLLQEMQALTQTFNNNWSYEGLRHMSGSELTELLDQVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 GAIRDFSEELVQQLARRDELEFEKEVKNSFITVLIEVQNKQKEQRELMKKRRKEKGLSLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GAIRDFSEELVQQLARRDELEFEKEVKNSFITVLIEVQNKQKEQRELMKKRRKEKGLSLQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 SSRIEKGNQMPLKRFSMEGISNILQSGIRQTFGSSGTDKQYLNTVIPYEKKASPPSVEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSRIEKGNQMPLKRFSMEGISNILQSGIRQTFGSSGTDKQYLNTVIPYEKKASPPSVEDL
310 320 330 340 350 360
370 380 390
pF1KB5 QMLTNILFAMKEDNEKVPTLLTDYILKVLCPT
::::::::::::::::::::::::::::::::
XP_005 QMLTNILFAMKEDNEKVPTLLTDYILKVLCPT
370 380 390
>>XP_005271791 (OMIM: 604825) PREDICTED: fasciculation a (392 aa)
initn: 2551 init1: 2551 opt: 2551 Z-score: 1912.9 bits: 362.8 E(85289): 8.2e-100
Smith-Waterman score: 2551; 100.0% identity (100.0% similar) in 392 aa overlap (1-392:1-392)
10 20 30 40 50 60
pF1KB5 MEAPLVSLDEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEAPLVSLDEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSME
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 DLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQDEEVWDALTDNYIPSLSED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQDEEVWDALTDNYIPSLSED
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 WRDPNIEALNGNCSDTEIHEKEEEEFNEKSENDSGINEEPLLTADQVIEEIEEMMQNSPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WRDPNIEALNGNCSDTEIHEKEEEEFNEKSENDSGINEEPLLTADQVIEEIEEMMQNSPD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PEEEEEVLEEEDGGETSSQADSVLLQEMQALTQTFNNNWSYEGLRHMSGSELTELLDQVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PEEEEEVLEEEDGGETSSQADSVLLQEMQALTQTFNNNWSYEGLRHMSGSELTELLDQVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 GAIRDFSEELVQQLARRDELEFEKEVKNSFITVLIEVQNKQKEQRELMKKRRKEKGLSLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GAIRDFSEELVQQLARRDELEFEKEVKNSFITVLIEVQNKQKEQRELMKKRRKEKGLSLQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 SSRIEKGNQMPLKRFSMEGISNILQSGIRQTFGSSGTDKQYLNTVIPYEKKASPPSVEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSRIEKGNQMPLKRFSMEGISNILQSGIRQTFGSSGTDKQYLNTVIPYEKKASPPSVEDL
310 320 330 340 350 360
370 380 390
pF1KB5 QMLTNILFAMKEDNEKVPTLLTDYILKVLCPT
::::::::::::::::::::::::::::::::
XP_005 QMLTNILFAMKEDNEKVPTLLTDYILKVLCPT
370 380 390
>>NP_001036013 (OMIM: 604826) fasciculation and elongati (380 aa)
initn: 734 init1: 437 opt: 917 Z-score: 699.7 bits: 138.2 E(85289): 3.1e-32
Smith-Waterman score: 1047; 52.6% identity (77.2% similar) in 342 aa overlap (66-392:54-380)
40 50 60 70 80 90
pF1KB5 HHLEDPSLSELENFSSEIISFKSMEDLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQE
..:::..::: . .: : .. ..
NP_001 ENCNASPEPGAEAGAEAGGGADGFPAPACSLEEKLSLCFRPSDPGAE---PPRTAVRPIT
30 40 50 60 70 80
100 110 120 130 140
pF1KB5 EEETLQDEEVWDALTDNYIPSLSEDWRDPNIEALN--------GNCSDTEIHE-KEEEEF
:. :: .:.:.:::::: . ::.. . ..:. . ::. . . ...::.
NP_001 ERSLLQGDEIWNALTDNYGNVMPVDWKSSHTRTLHLLTLNLSEKGVSDSLLFDTSDDEEL
90 100 110 120 130 140
150 160 170 180 190 200
pF1KB5 NEKSENDSGI----NEEPLLTADQVIEEIEEMMQNSPDPEEEEEVLEEEDGGETSSQAD-
:. . : : :.:::.::::::::::::::.:::::..: : .:.:
NP_001 REQLDMHSIIVSCVNDEPLFTADQVIEEIEEMMQESPDPEDDE----------TPTQSDR
150 160 170 180 190
210 220 230 240 250 260
pF1KB5 -SVLLQEMQALTQTFNNNWSYEGLRHMSGSELTELLDQVEGAIRDFSEELVQQLARRDEL
:.: ::.:.: .. .... : ....: :::.:.:...: ::...::::::::: ::::
NP_001 LSMLSQEIQTLKRSSTGSYE-ERVKRLSVSELNEILEEIETAIKEYSEELVQQLALRDEL
200 210 220 230 240
270 280 290 300 310 320
pF1KB5 EFEKEVKNSFITVLIEVQNKQKEQRELMKKRRKEKGLSLQSSRIEKGNQMPLKRFSMEGI
:::::::::::.:::::::::::..: ::..: :. : :... :. ..:: :::::::
NP_001 EFEKEVKNSFISVLIEVQNKQKEHKETAKKKKKLKNGSSQNGKNER-SHMPGTRFSMEGI
250 260 270 280 290 300
330 340 350 360 370 380
pF1KB5 SNILQSGIRQTFGSSGTDKQYLNTVIPYEKKASPPSVEDLQMLTNILFAMKEDNEKVPTL
::..:.:.:.:::.:: .::::.:::::::: .::::::::.::.:: :::::.::::.:
NP_001 SNVIQNGLRHTFGNSGGEKQYLTTVIPYEKKNGPPSVEDLQILTKILRAMKEDSEKVPSL
310 320 330 340 350 360
390
pF1KB5 LTDYILKVLCPT
::::::::::::
NP_001 LTDYILKVLCPT
370 380
>>XP_006712216 (OMIM: 604826) PREDICTED: fasciculation a (279 aa)
initn: 608 init1: 437 opt: 808 Z-score: 620.7 bits: 123.2 E(85289): 7.8e-28
Smith-Waterman score: 942; 60.4% identity (83.5% similar) in 260 aa overlap (135-392:32-279)
110 120 130 140 150 160
pF1KB5 VWDALTDNYIPSLSEDWRDPNIEALNGNCSDTEIHEKEEEEFNEKSENDSGINEEPLLTA
:: :. .:... .: : .:.:::.::
XP_006 PVDWKSSHTRTLHLLTLNLSEKGVSDSLLFDTSDDEELREQLDMHSIIVSCVNDEPLFTA
10 20 30 40 50 60
170 180 190 200 210 220
pF1KB5 DQVIEEIEEMMQNSPDPEEEEEVLEEEDGGETSSQAD--SVLLQEMQALTQTFNNNWSYE
::::::::::::.:::::..: : .:.: :.: ::.:.: .. .... :
XP_006 DQVIEEIEEMMQESPDPEDDE----------TPTQSDRLSMLSQEIQTLKRSSTGSYE-E
70 80 90 100 110
230 240 250 260 270 280
pF1KB5 GLRHMSGSELTELLDQVEGAIRDFSEELVQQLARRDELEFEKEVKNSFITVLIEVQNKQK
....: :::.:.:...: ::...::::::::: :::::::::::::::.::::::::::
XP_006 RVKRLSVSELNEILEEIETAIKEYSEELVQQLALRDELEFEKEVKNSFISVLIEVQNKQK
120 130 140 150 160 170
290 300 310 320 330 340
pF1KB5 EQRELMKKRRKEKGLSLQSSRIEKGNQMPLKRFSMEGISNILQSGIRQTFGSSGTDKQYL
:..: ::..: :. : :... :. ..:: :::::::::..:.:.:.:::.:: .::::
XP_006 EHKETAKKKKKLKNGSSQNGKNER-SHMPGTRFSMEGISNVIQNGLRHTFGNSGGEKQYL
180 190 200 210 220
350 360 370 380 390
pF1KB5 NTVIPYEKKASPPSVEDLQMLTNILFAMKEDNEKVPTLLTDYILKVLCPT
.:::::::: .::::::::.::.:: :::::.::::.:::::::::::::
XP_006 TTVIPYEKKNGPPSVEDLQILTKILRAMKEDSEKVPSLLTDYILKVLCPT
230 240 250 260 270
>>NP_072043 (OMIM: 604825) fasciculation and elongation (104 aa)
initn: 695 init1: 695 opt: 695 Z-score: 543.0 bits: 107.4 E(85289): 1.6e-23
Smith-Waterman score: 695; 100.0% identity (100.0% similar) in 104 aa overlap (1-104:1-104)
10 20 30 40 50 60
pF1KB5 MEAPLVSLDEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_072 MEAPLVSLDEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSME
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 DLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQDEEVWDALTDNYIPSLSED
::::::::::::::::::::::::::::::::::::::::::::
NP_072 DLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQDEE
70 80 90 100
130 140 150 160 170 180
pF1KB5 WRDPNIEALNGNCSDTEIHEKEEEEFNEKSENDSGINEEPLLTADQVIEEIEEMMQNSPD
>>NP_005093 (OMIM: 604826) fasciculation and elongation (353 aa)
initn: 888 init1: 320 opt: 499 Z-score: 389.8 bits: 80.8 E(85289): 5.7e-15
Smith-Waterman score: 853; 47.7% identity (70.2% similar) in 342 aa overlap (66-392:54-353)
40 50 60 70 80 90
pF1KB5 HHLEDPSLSELENFSSEIISFKSMEDLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQE
..:::..::: . .: : .. ..
NP_005 ENCNASPEPGAEAGAEAGGGADGFPAPACSLEEKLSLCFRPSDPGAE---PPRTAVRPIT
30 40 50 60 70 80
100 110 120 130 140
pF1KB5 EEETLQDEEVWDALTDNYIPSLSEDWRDPNIEALN--------GNCSDTEIHE-KEEEEF
:. :: .:.:.:::::: . ::.. . ..:. . ::. . . ...::.
NP_005 ERSLLQGDEIWNALTDNYGNVMPVDWKSSHTRTLHLLTLNLSEKGVSDSLLFDTSDDEEL
90 100 110 120 130 140
150 160 170 180 190 200
pF1KB5 NEKSENDSGI----NEEPLLTADQVIEEIEEMMQNSPDPEEEEEVLEEEDGGETSSQAD-
:. . : : :.:::.::::::::::::::.:::::..: : .:.:
NP_005 REQLDMHSIIVSCVNDEPLFTADQVIEEIEEMMQESPDPEDDE----------TPTQSDR
150 160 170 180 190
210 220 230 240 250 260
pF1KB5 -SVLLQEMQALTQTFNNNWSYEGLRHMSGSELTELLDQVEGAIRDFSEELVQQLARRDEL
:.: ::.:.: .. .... : ....: :::.:.:...: ::...::::::::: ::::
NP_005 LSMLSQEIQTLKRSSTGSYE-ERVKRLSVSELNEILEEIETAIKEYSEELVQQLALRDEL
200 210 220 230 240
270 280 290 300 310 320
pF1KB5 EFEKEVKNSFITVLIEVQNKQKEQRELMKKRRKEKGLSLQSSRIEKGNQMPLKRFSMEGI
:::::::::::.:::::::::::..: ::..: :. : :... :. ..::
NP_005 EFEKEVKNSFISVLIEVQNKQKEHKETAKKKKKLKNGSSQNGKNER-SHMP---------
250 260 270 280 290
330 340 350 360 370 380
pF1KB5 SNILQSGIRQTFGSSGTDKQYLNTVIPYEKKASPPSVEDLQMLTNILFAMKEDNEKVPTL
:: ::.:::::::: .::::::::.::.:: :::::.::::.:
NP_005 ---------------GT---YLTTVIPYEKKNGPPSVEDLQILTKILRAMKEDSEKVPSL
300 310 320 330 340
390
pF1KB5 LTDYILKVLCPT
::::::::::::
NP_005 LTDYILKVLCPT
350
392 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 21:03:56 2016 done: Sat Nov 5 21:03:57 2016
Total Scan time: 9.820 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]