Result of FASTA (omim) for
pF1KB5318
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5318, 425 aa
1>>>pF1KB5318 425 - 425 aa - 425 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5873+/-0.000517; mu= 11.0827+/- 0.031
mean_var=178.8069+/-39.845, 0's: 0 Z-trim(112.5): 251 B-trim: 306 in 1/51
Lambda= 0.095914
statistics sampled from 21160 (21491) to 21160 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.252), width: 16
Scan time: 8.740
The best scores are: opt bits E(85289)
NP_002884 (OMIM: 300825) histone-binding protein R ( 425) 2930 418.7 1.4e-116
NP_001185648 (OMIM: 300825) histone-binding protei ( 469) 2897 414.2 3.6e-115
NP_001128727 (OMIM: 602923) histone-binding protei ( 424) 2652 380.2 5.4e-105
NP_005601 (OMIM: 602923) histone-binding protein R ( 425) 2640 378.5 1.7e-104
NP_001128728 (OMIM: 602923) histone-binding protei ( 390) 2451 352.3 1.2e-96
XP_005267076 (OMIM: 215100,266500,601757,614879) P ( 285) 253 48.0 3.6e-05
NP_000279 (OMIM: 215100,266500,601757,614879) pero ( 323) 253 48.1 3.9e-05
NP_001177386 (OMIM: 605002) coronin-2B isoform 2 [ ( 475) 246 47.3 9.7e-05
NP_001310944 (OMIM: 605002) coronin-2B isoform 2 [ ( 475) 246 47.3 9.7e-05
NP_001310943 (OMIM: 605002) coronin-2B isoform 2 [ ( 475) 246 47.3 9.7e-05
NP_001177385 (OMIM: 605002) coronin-2B isoform 2 [ ( 475) 246 47.3 9.7e-05
NP_006082 (OMIM: 605002) coronin-2B isoform 1 [Hom ( 480) 246 47.3 9.8e-05
XP_011517288 (OMIM: 602159) PREDICTED: coronin-2A ( 525) 245 47.2 0.00011
NP_438171 (OMIM: 602159) coronin-2A [Homo sapiens] ( 525) 245 47.2 0.00011
NP_003380 (OMIM: 602159) coronin-2A [Homo sapiens] ( 525) 245 47.2 0.00011
XP_011509771 (OMIM: 616620) PREDICTED: ribosome bi ( 285) 232 45.1 0.00027
NP_060726 (OMIM: 616620) ribosome biogenesis prote ( 423) 232 45.3 0.00035
NP_942590 (OMIM: 608141) nucleoporin Nup43 [Homo s ( 380) 226 44.4 0.00057
NP_006089 (OMIM: 176981) receptor of activated pro ( 317) 223 43.9 0.00068
NP_008882 (OMIM: 601787) transcription initiation ( 800) 227 45.0 0.00084
XP_005267019 (OMIM: 608141) PREDICTED: nucleoporin ( 313) 220 43.5 0.0009
XP_011534101 (OMIM: 608141) PREDICTED: nucleoporin ( 317) 220 43.5 0.00091
XP_005267018 (OMIM: 608141) PREDICTED: nucleoporin ( 333) 220 43.5 0.00094
XP_005267017 (OMIM: 608141) PREDICTED: nucleoporin ( 333) 220 43.5 0.00094
XP_011534100 (OMIM: 608141) PREDICTED: nucleoporin ( 347) 220 43.6 0.00096
NP_001307813 (OMIM: 603331) cytoplasmic dynein 1 i ( 611) 223 44.3 0.001
NP_001258719 (OMIM: 603331) cytoplasmic dynein 1 i ( 611) 223 44.3 0.001
NP_001258718 (OMIM: 603331) cytoplasmic dynein 1 i ( 612) 223 44.3 0.001
NP_001258717 (OMIM: 603331) cytoplasmic dynein 1 i ( 612) 223 44.3 0.001
NP_001258715 (OMIM: 603331) cytoplasmic dynein 1 i ( 630) 223 44.3 0.0011
NP_001258716 (OMIM: 603331) cytoplasmic dynein 1 i ( 630) 223 44.3 0.0011
XP_016859014 (OMIM: 603331) PREDICTED: cytoplasmic ( 631) 223 44.3 0.0011
XP_006712410 (OMIM: 603331) PREDICTED: cytoplasmic ( 631) 223 44.3 0.0011
NP_001307812 (OMIM: 603331) cytoplasmic dynein 1 i ( 632) 223 44.3 0.0011
NP_001307811 (OMIM: 603331) cytoplasmic dynein 1 i ( 632) 223 44.3 0.0011
NP_001258714 (OMIM: 603331) cytoplasmic dynein 1 i ( 638) 223 44.3 0.0011
NP_001369 (OMIM: 603331) cytoplasmic dynein 1 inte ( 638) 223 44.3 0.0011
NP_001308124 (OMIM: 270710,602342,608628,616944) F ( 427) 219 43.5 0.0012
NP_113673 (OMIM: 610597) glutamate-rich WD repeat- ( 446) 219 43.6 0.0012
NP_001308123 (OMIM: 270710,602342,608628,616944) F ( 514) 219 43.6 0.0014
NP_078941 (OMIM: 270710,602342,608628,616944) F-bo ( 514) 219 43.6 0.0014
XP_011511445 (OMIM: 270710,602342,608628,616944) P ( 514) 219 43.6 0.0014
XP_011511443 (OMIM: 270710,602342,608628,616944) P ( 514) 219 43.6 0.0014
NP_001308122 (OMIM: 270710,602342,608628,616944) F ( 514) 219 43.6 0.0014
XP_006713809 (OMIM: 270710,602342,608628,616944) P ( 514) 219 43.6 0.0014
XP_011511444 (OMIM: 270710,602342,608628,616944) P ( 514) 219 43.6 0.0014
XP_016862674 (OMIM: 270710,602342,608628,616944) P ( 514) 219 43.6 0.0014
XP_005247832 (OMIM: 270710,602342,608628,616944) P ( 514) 219 43.6 0.0014
NP_620640 (OMIM: 601787) transcription initiation ( 745) 220 44.0 0.0016
NP_001188402 (OMIM: 611668) coronin-7 isoform 3 [H ( 840) 220 44.0 0.0017
>>NP_002884 (OMIM: 300825) histone-binding protein RBBP7 (425 aa)
initn: 2930 init1: 2930 opt: 2930 Z-score: 2213.8 bits: 418.7 E(85289): 1.4e-116
Smith-Waterman score: 2930; 100.0% identity (100.0% similar) in 425 aa overlap (1-425:1-425)
10 20 30 40 50 60
pF1KB5 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSEL
370 380 390 400 410 420
pF1KB5 EGQGS
:::::
NP_002 EGQGS
>>NP_001185648 (OMIM: 300825) histone-binding protein RB (469 aa)
initn: 2897 init1: 2897 opt: 2897 Z-score: 2188.6 bits: 414.2 E(85289): 3.6e-115
Smith-Waterman score: 2897; 99.3% identity (99.8% similar) in 422 aa overlap (4-425:48-469)
10 20 30
pF1KB5 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDL
. .:::::::::::::::::::::::::::
NP_001 WRDQACGLLLHVHLSSRLGRAAPVRTGRHLRTVFEDTVEERVINEEYKIWKKNTPFLYDL
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB5 VMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFD
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB5 ASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDY
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB5 TKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEG
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB5 KIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTA
260 270 280 290 300 310
280 290 300 310 320 330
pF1KB5 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA
320 330 340 350 360 370
340 350 360 370 380 390
pF1KB5 SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS
380 390 400 410 420 430
400 410 420
pF1KB5 EDNIMQIWQMAENIYNDEESDVTTSELEGQGS
::::::::::::::::::::::::::::::::
NP_001 EDNIMQIWQMAENIYNDEESDVTTSELEGQGS
440 450 460
>>NP_001128727 (OMIM: 602923) histone-binding protein RB (424 aa)
initn: 2780 init1: 2633 opt: 2652 Z-score: 2005.9 bits: 380.2 E(85289): 5.4e-105
Smith-Waterman score: 2652; 89.4% identity (96.7% similar) in 425 aa overlap (1-425:1-424)
10 20 30 40 50 60
pF1KB5 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY
::.:: :.:.:::::::::::::::::::::::::::::.:::::.::::.::.:::::.
NP_001 MADKEAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKI
..: :::::::::::::::.: :..::::::::::: ::.::::::::::.:::: ::::
NP_001 SIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY
:::::::::::::::: ::::::::::::::::::::.::::::::::::::::::::::
NP_001 NHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES
::::: ::::::::::::::.:::::.: :::::.::::.:::::.::::::.:::::::
NP_001 GLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHES
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW
:::::::::::::::::::.:::::: :::::::::::::::::::::::::::::::::
NP_001 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED
::::::::::.:::::::::::.::::::::::::::::::::::::::::::: :::::
NP_001 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAED
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSEL
:::::::::::::::::::::::::::::::::::::::.:::::::::::. . ...
NP_001 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDP-
370 380 390 400 410
pF1KB5 EGQGS
:::::
NP_001 EGQGS
420
>>NP_005601 (OMIM: 602923) histone-binding protein RBBP4 (425 aa)
initn: 2739 init1: 2592 opt: 2640 Z-score: 1996.9 bits: 378.5 E(85289): 1.7e-104
Smith-Waterman score: 2640; 89.2% identity (96.5% similar) in 426 aa overlap (1-425:1-425)
10 20 30 40 50
pF1KB5 MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD
::.:: :.:.:::::::::::::::::::::::::::::.:::::.::::.::.:::::
NP_005 MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIK
...: :::::::::::::::.: :..::::::::::: ::.::::::::::.:::: :::
NP_005 FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB5 INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG
::::::::::::::::: ::::::::::::::::::::.:::::::::::::::::::::
NP_005 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB5 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE
:::::: ::::::::::::::.:::::.: :::::.::::.:::::.::::::.::::::
NP_005 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB5 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
::::::::::::::::::::.:::::: ::::::::::::::::::::::::::::::::
NP_005 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB5 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE
:::::::::::.:::::::::::.::::::::::::::::::::::::::::::: ::::
NP_005 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB5 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSE
::::::::::::::::::::::::::::::::::::::::.:::::::::::. . ...
NP_005 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDP
370 380 390 400 410 420
420
pF1KB5 LEGQGS
:::::
NP_005 -EGQGS
>>NP_001128728 (OMIM: 602923) histone-binding protein RB (390 aa)
initn: 2579 init1: 2432 opt: 2451 Z-score: 1856.0 bits: 352.3 E(85289): 1.2e-96
Smith-Waterman score: 2451; 89.5% identity (96.7% similar) in 391 aa overlap (35-425:1-390)
10 20 30 40 50 60
pF1KB5 EMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHW
:::::.:::::.::::.::.:::::...:
NP_001 MTHALEWPSLTAQWLPDVTRPEGKDFSIHR
10 20 30
70 80 90 100 110 120
pF1KB5 LVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEG
:::::::::::::::.: :..::::::::::: ::.::::::::::.:::: ::::::::
NP_001 LVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEG
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB5 EVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSW
:::::::::::: ::::::::::::::::::::.::::::::::::::::::::::::::
NP_001 EVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSW
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB5 NSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGS
: ::::::::::::::.:::::.: :::::.::::.:::::.::::::.:::::::::::
NP_001 NPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB5 VADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN
:::::::::::::::.:::::: :::::::::::::::::::::::::::::::::::::
NP_001 VADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB5 LKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPE
::::::.:::::::::::.::::::::::::::::::::::::::::::: :::::::::
NP_001 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPE
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB5 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSELEGQG
:::::::::::::::::::::::::::::::::::.:::::::::::. . ... ::::
NP_001 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDP-EGQG
340 350 360 370 380
pF1KB5 S
:
NP_001 S
390
>>XP_005267076 (OMIM: 215100,266500,601757,614879) PREDI (285 aa)
initn: 352 init1: 176 opt: 253 Z-score: 213.8 bits: 48.0 E(85289): 3.6e-05
Smith-Waterman score: 312; 27.2% identity (56.8% similar) in 250 aa overlap (135-382:41-270)
110 120 130 140 150 160
pF1KB5 GGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSG
: :.. : . .... ..: .:
XP_005 LILDPDEAGLRLFRSFDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAK---------
20 30 40 50 60
170 180 190 200 210 220
pF1KB5 ECNPDLRLRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVDAKAIFT
.: . : .: :...:... . .:. :.: :.:: ::: : :: . :
XP_005 AAGPLQVYKEHAQEVYSVDWSQTRGEQLVVSGSWDQTVKLWD----PTVGKSL---CTFR
70 80 90 100 110
230 240 250 260 270 280
pF1KB5 GHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY
:: ... .. : . :.:.. :: : :::... . .. :: ::. .. :
XP_005 GHESIIYSTIWSPHIPGCFASASGDQTLRIWDVKAAGVRI---VIPAHQAEILSCDWCKY
120 130 140 150 160 170
290 300 310 320 330 340
pF1KB5 SEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNV
.: .:.::..: .. :::::.. . . .: : .:..:: . ..::: . : .
XP_005 NENLLVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRF
180 190 200 210 220 230
350 360 370 380 390 400
pF1KB5 WDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ
:..:: ...: . : : . : ...: ::.
XP_005 WNFSKPDSLLETVEHHTEFTCGLDFSLQSPT-QVADCSWDETIKIYDPACLTIPA
240 250 260 270 280
410 420
pF1KB5 MAENIYNDEESDVTTSELEGQGS
>>NP_000279 (OMIM: 215100,266500,601757,614879) peroxiso (323 aa)
initn: 269 init1: 176 opt: 253 Z-score: 213.2 bits: 48.1 E(85289): 3.9e-05
Smith-Waterman score: 312; 27.2% identity (56.8% similar) in 250 aa overlap (135-382:79-308)
110 120 130 140 150 160
pF1KB5 GGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSG
: :.. : . .... ..: .:
NP_000 LILDPDEAGLRLFRSFDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAK---------
50 60 70 80 90
170 180 190 200 210 220
pF1KB5 ECNPDLRLRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVDAKAIFT
.: . : .: :...:... . .:. :.: :.:: ::: : :: . :
NP_000 AAGPLQVYKEHAQEVYSVDWSQTRGEQLVVSGSWDQTVKLWD----PTVGKSL---CTFR
100 110 120 130 140 150
230 240 250 260 270 280
pF1KB5 GHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY
:: ... .. : . :.:.. :: : :::... . .. :: ::. .. :
NP_000 GHESIIYSTIWSPHIPGCFASASGDQTLRIWDVKAAGVRI---VIPAHQAEILSCDWCKY
160 170 180 190 200
290 300 310 320 330 340
pF1KB5 SEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNV
.: .:.::..: .. :::::.. . . .: : .:..:: . ..::: . : .
NP_000 NENLLVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRF
210 220 230 240 250 260
350 360 370 380 390 400
pF1KB5 WDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ
:..:: ...: . : : . : ...: ::.
NP_000 WNFSKPDSLLETVEHHTEFTCGLDFSLQSPT-QVADCSWDETIKIYDPACLTIPA
270 280 290 300 310 320
410 420
pF1KB5 MAENIYNDEESDVTTSELEGQGS
>>NP_001177386 (OMIM: 605002) coronin-2B isoform 2 [Homo (475 aa)
initn: 258 init1: 154 opt: 246 Z-score: 206.1 bits: 47.3 E(85289): 9.7e-05
Smith-Waterman score: 246; 24.2% identity (55.5% similar) in 265 aa overlap (107-367:16-270)
80 90 100 110 120 130
pF1KB5 HLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNP
.:.:... .: : .:. .. :
NP_001 MSWRPQYRSSKFRNVYGKVANREHCFDGIPITKNVHDNHFCAVNT
10 20 30 40
140 150 160 170 180 190
pF1KB5 HIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDL-RLRGHQKEGYGLSWNSNLSGHLLSA
...: : :. : : . .:. .:. .. ::: . ..:: ... . :
NP_001 RFLAIVTESAGGGSFLVI--PL--EQTGRIEPNYPKVCGHQGNVLDIKWNPFIDNIIASC
50 60 70 80 90 100
200 210 220 230 240 250
pF1KB5 SDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWD
:.: .: .:.: : . ....: . ::: : : :: .... :.. : :..::.
NP_001 SEDTSVRIWEIPEGGLKRNMTEALLELHGHSRRVGLVEWHPTTNNILFSAGYDYKVLIWN
110 120 130 140 150 160
260 270 280 290 300 310
pF1KB5 TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESH
...: ...: :: . :.::: . .:.: :: . . . :. .. :. . .
NP_001 L---DVGEPVKMIDCHTDVILCMSFNTDGS-LLTTTCKDKKLRVIEPRSGRV-LQEANCK
170 180 190 200 210
320 330 340 350 360 370
pF1KB5 KDEIFQVHWSPHNETILA---SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH
. .. .: . . . .:. : . :.. .:: .. :. :: :::
NP_001 NHRVNRVVFLGNMKRLLTTGVSRWNTRQIALWDQEDLSMPLIEEEI-DGLSGLLFPFYDA
220 230 240 250 260 270
380 390 400 410 420
pF1KB5 TAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSELEGQGS
NP_001 DTHMLYLAGKGDGNIRYYEISTEKPYLSYLMEFRSPAPQKGLGVMPKHGLDVSACEVFRF
280 290 300 310 320 330
>>NP_001310944 (OMIM: 605002) coronin-2B isoform 2 [Homo (475 aa)
initn: 258 init1: 154 opt: 246 Z-score: 206.1 bits: 47.3 E(85289): 9.7e-05
Smith-Waterman score: 246; 24.2% identity (55.5% similar) in 265 aa overlap (107-367:16-270)
80 90 100 110 120 130
pF1KB5 HLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNP
.:.:... .: : .:. .. :
NP_001 MSWRPQYRSSKFRNVYGKVANREHCFDGIPITKNVHDNHFCAVNT
10 20 30 40
140 150 160 170 180 190
pF1KB5 HIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDL-RLRGHQKEGYGLSWNSNLSGHLLSA
...: : :. : : . .:. .:. .. ::: . ..:: ... . :
NP_001 RFLAIVTESAGGGSFLVI--PL--EQTGRIEPNYPKVCGHQGNVLDIKWNPFIDNIIASC
50 60 70 80 90 100
200 210 220 230 240 250
pF1KB5 SDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWD
:.: .: .:.: : . ....: . ::: : : :: .... :.. : :..::.
NP_001 SEDTSVRIWEIPEGGLKRNMTEALLELHGHSRRVGLVEWHPTTNNILFSAGYDYKVLIWN
110 120 130 140 150 160
260 270 280 290 300 310
pF1KB5 TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESH
...: ...: :: . :.::: . .:.: :: . . . :. .. :. . .
NP_001 L---DVGEPVKMIDCHTDVILCMSFNTDGS-LLTTTCKDKKLRVIEPRSGRV-LQEANCK
170 180 190 200 210
320 330 340 350 360 370
pF1KB5 KDEIFQVHWSPHNETILA---SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH
. .. .: . . . .:. : . :.. .:: .. :. :: :::
NP_001 NHRVNRVVFLGNMKRLLTTGVSRWNTRQIALWDQEDLSMPLIEEEI-DGLSGLLFPFYDA
220 230 240 250 260 270
380 390 400 410 420
pF1KB5 TAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSELEGQGS
NP_001 DTHMLYLAGKGDGNIRYYEISTEKPYLSYLMEFRSPAPQKGLGVMPKHGLDVSACEVFRF
280 290 300 310 320 330
>>NP_001310943 (OMIM: 605002) coronin-2B isoform 2 [Homo (475 aa)
initn: 258 init1: 154 opt: 246 Z-score: 206.1 bits: 47.3 E(85289): 9.7e-05
Smith-Waterman score: 246; 24.2% identity (55.5% similar) in 265 aa overlap (107-367:16-270)
80 90 100 110 120 130
pF1KB5 HLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNP
.:.:... .: : .:. .. :
NP_001 MSWRPQYRSSKFRNVYGKVANREHCFDGIPITKNVHDNHFCAVNT
10 20 30 40
140 150 160 170 180 190
pF1KB5 HIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDL-RLRGHQKEGYGLSWNSNLSGHLLSA
...: : :. : : . .:. .:. .. ::: . ..:: ... . :
NP_001 RFLAIVTESAGGGSFLVI--PL--EQTGRIEPNYPKVCGHQGNVLDIKWNPFIDNIIASC
50 60 70 80 90 100
200 210 220 230 240 250
pF1KB5 SDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWD
:.: .: .:.: : . ....: . ::: : : :: .... :.. : :..::.
NP_001 SEDTSVRIWEIPEGGLKRNMTEALLELHGHSRRVGLVEWHPTTNNILFSAGYDYKVLIWN
110 120 130 140 150 160
260 270 280 290 300 310
pF1KB5 TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESH
...: ...: :: . :.::: . .:.: :: . . . :. .. :. . .
NP_001 L---DVGEPVKMIDCHTDVILCMSFNTDGS-LLTTTCKDKKLRVIEPRSGRV-LQEANCK
170 180 190 200 210
320 330 340 350 360 370
pF1KB5 KDEIFQVHWSPHNETILA---SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH
. .. .: . . . .:. : . :.. .:: .. :. :: :::
NP_001 NHRVNRVVFLGNMKRLLTTGVSRWNTRQIALWDQEDLSMPLIEEEI-DGLSGLLFPFYDA
220 230 240 250 260 270
380 390 400 410 420
pF1KB5 TAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSELEGQGS
NP_001 DTHMLYLAGKGDGNIRYYEISTEKPYLSYLMEFRSPAPQKGLGVMPKHGLDVSACEVFRF
280 290 300 310 320 330
425 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:35:07 2016 done: Fri Nov 4 03:35:08 2016
Total Scan time: 8.740 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]