FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5326, 450 aa
  1>>>pF1KB5326 450 - 450 aa - 450 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3605+/-0.00093; mu= 12.7824+/- 0.056
 mean_var=88.1153+/-17.618, 0's: 0 Z-trim(107.6): 35  B-trim: 262 in 1/50
 Lambda= 0.136631
 statistics sampled from 9647 (9678) to 9647 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.297), width:  16
 Scan time:  2.870

The best scores are:                                      opt bits E(32554)
CCDS3032.1 SNX4 gene_id:8723|Hs108|chr3            ( 450) 2981 597.6 8.2e-171
CCDS43865.1 SNX30 gene_id:401548|Hs108|chr9        ( 437)  356 80.2 4.6e-15
CCDS755.2 SNX7 gene_id:51375|Hs108|chr1            ( 451)  330 75.1 1.7e-13


>>CCDS3032.1 SNX4 gene_id:8723|Hs108|chr3                 (450 aa)
 initn: 2981 init1: 2981 opt: 2981  Z-score: 3180.1  bits: 597.6 E(32554): 8.2e-171
Smith-Waterman score: 2981; 100.0% identity (100.0% similar) in 450 aa overlap (1-450:1-450)

               10        20        30        40        50        60
pF1KB5 MEQAPPDPERQLQPAPLEPLGSPDAGLGAAVGKEAEGAGEESSGVDTMTHNNFWLKKIEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MEQAPPDPERQLQPAPLEPLGSPDAGLGAAVGKEAEGAGEESSGVDTMTHNNFWLKKIEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SVSEAEKRTGRNAMNMQETYTAYLIETRSVEHTDGQSVLTDSLWRRYSEFELLRSYLLVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SVSEAEKRTGRNAMNMQETYTAYLIETRSVEHTDGQSVLTDSLWRRYSEFELLRSYLLVY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 YPHIVVPPLPEKRAEFVWHKLSADNMDPDFVERRRIGLENFLLRIASHPILCRDKIFYLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 YPHIVVPPLPEKRAEFVWHKLSADNMDPDFVERRRIGLENFLLRIASHPILCRDKIFYLF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 LTQEGNWKETVNETGFQLKADSRLKALNATFRVKNPDKRFTDLKHYSDELQSVISHLLRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LTQEGNWKETVNETGFQLKADSRLKALNATFRVKNPDKRFTDLKHYSDELQSVISHLLRV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 RARVADRLYGVYKVHGNYGRVFSEWSAIEKEMGDGLQSAGHHMDVYASSIDDILEDEEHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RARVADRLYGVYKVHGNYGRVFSEWSAIEKEMGDGLQSAGHHMDVYASSIDDILEDEEHY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 ADQLKEYLFYAEALRAVCRKHELMQYDLEMAAQDLASKKQQCEELVTGTVRTFSLKGMTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ADQLKEYLFYAEALRAVCRKHELMQYDLEMAAQDLASKKQQCEELVTGTVRTFSLKGMTT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 KLFGQETPEQREARIKVLEEQINEGEQQLKSKNLEGREFVKNAWADIERFKEQKNRDLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KLFGQETPEQREARIKVLEEQINEGEQQLKSKNLEGREFVKNAWADIERFKEQKNRDLKE
              370       380       390       400       410       420

              430       440       450
pF1KB5 ALISYAVMQISMCKKGIQVWTNAKECFSKM
       ::::::::::::::::::::::::::::::
CCDS30 ALISYAVMQISMCKKGIQVWTNAKECFSKM
              430       440       450

>>CCDS43865.1 SNX30 gene_id:401548|Hs108|chr9             (437 aa)
 initn: 259 init1: 171 opt: 356  Z-score: 383.9  bits: 80.2 E(32554): 4.6e-15
Smith-Waterman score: 356; 28.5% identity (61.0% similar) in 267 aa overlap (78-340:106-363)

        50        60        70        80        90       100       
pF1KB5 MTHNNFWLKKIEISVSEAEKRTGRNAMNMQETYTAYLIETRSVEHTDGQSVLTD-SLWRR
                                     ::: .: : :.:   :  .  : . :. ::
CCDS43 NRLQLDDDIDGETRDLFVIVDDPKKHVCTMETYITYRITTKS---TRVEFDLPEYSVRRR
          80        90       100       110          120       130  

        110       120       130       140       150       160      
pF1KB5 YSEFELLRSYLLVYYPHIVVPPLPEKRAEFVWHKLSADNMDPDFVERRRIGLENFLLRIA
       :..:. ::: :    :  ..::::::   ::  :  .: .. .::: :: .:..:: ::.
CCDS43 YQDFDWLRSKLEESQPTHLIPPLPEK---FVV-KGVVDRFSEEFVETRRKALDKFLKRIT
            140       150          160        170       180        

        170       180       190         200       210       220    
pF1KB5 SHPILCRDKIFYLFLTQEGNWKETVNETGFQL--KADSRLKALNATFRVKNPDKRFTDLK
       .::.:  .. : .::: .    .. .. :. :  .    .: ... .....   .:. . 
CCDS43 DHPVLSFNEHFNIFLTAKD--LNAYKKQGIALLTRMGESVKHVTGGYKLRTRPLEFAAIG
      190       200         210       220       230       240      

          230       240       250       260       270       280    
pF1KB5 HYSDELQSVISHLLRVRARVADRLYGVYKVHGNYGRVFSEWSAIEKEMGDGLQSAGHHMD
        : : .   .. . :.  :.  .         .:: :.: :::.: :... :....  . 
CCDS43 DYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSALEGELAEPLEGVSACIG
        250       260       270       280       290       300      

          290        300       310       320       330       340   
pF1KB5 VYASSIDDILED-EEHYADQLKEYLFYAEALRAVCRKHELMQYDLEMAAQDLASKKQQCE
         ....... .:  : .   :.::..:......: .:.. .: . :   . .: .:.   
CCDS43 NCSTALEELTDDMTEDFLPVLREYILYSDSMKSVLKKRDQVQAEYEAKLEAVALRKEDRP
        310       320       330       340       350       360      

           350       360       370       380       390       400   
pF1KB5 ELVTGTVRTFSLKGMTTKLFGQETPEQREARIKVLEEQINEGEQQLKSKNLEGREFVKNA
                                                                   
CCDS43 KVPADVEKCQDRMECFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEKCLMAWESI
        370       380       390       400       410       420      

>>CCDS755.2 SNX7 gene_id:51375|Hs108|chr1                 (451 aa)
 initn: 241 init1: 113 opt: 330  Z-score: 356.0  bits: 75.1 E(32554): 1.7e-13
Smith-Waterman score: 339; 25.7% identity (60.5% similar) in 296 aa overlap (55-345:93-376)

           30        40        50        60        70        80    
pF1KB5 AGLGAAVGKEAEGAGEESSGVDTMTHNNFWLKKIEISVSEAEKRTGRNAMNMQETYTAYL
                                     :: . :.:.: :..     ..  ::. .: 
CCDS75 SLMDMNSFSPMMPTSPLSMINQIKFEDEPDLKDLFITVDEPESH-----VTTIETFITYR
             70        80        90       100            110       

           90       100       110       120       130       140    
pF1KB5 IETRSVEHTDGQSVLTDSLWRRYSEFELLRSYLLVYYPHIVVPPLPEKRAEFVWHKLSAD
       : :.. .    .: .   . :::..:  :.. :   .: ...::::::   :. . . ..
CCDS75 IITKTSRGEFDSSEF--EVRRRYQDFLWLKGKLEEAHPTLIIPPLPEK---FIVKGM-VE
       120       130         140       150       160           170 

          150       160       170       180       190          200 
pF1KB5 NMDPDFVERRRIGLENFLLRIASHPILCRDKIFYLFLTQEGNWKETVNET---GFQLKAD
        .. ::.: :: .:..:: :::.:: :  .. : .::: .. :. . ..    :.  .  
CCDS75 RFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQA-WELSSHKKQGPGLLSRMG
             180       190       200       210        220       230

             210        220       230       240       250       260
pF1KB5 SRLKALNATFR-VKNPDKRFTDLKHYSDELQSVISHLLRVRARVADRLYGVYKVHGNYGR
       . ..:. ...: :::  ..: ..... . ... :. . ..  :.  .    .    .:: 
CCDS75 QTVRAVASSMRGVKNRPEEFMEMNNFIELFSQKINLIDKISQRIYKEEREYFDEMKEYGP
              240       250       260       270       280       290

              270       280       290        300       310         
pF1KB5 VFSEWSAIEKEMGDGLQSAGHHMDVYASSIDDILED-EEHYADQLKEYLFYAEALRAVCR
       .   ::: :... : :....  .:   .. .  .    :     ..::..:.: : .: .
CCDS75 IHILWSASEEDLVDTLKDVASCIDRCCKATEKRMSGLSEALLPVVHEYVLYSEMLMGVMK
              300       310       320       330       340       350

     320       330       340       350       360       370         
pF1KB5 KHELMQYDLEMAAQDLASKKQQCEELVTGTVRTFSLKGMTTKLFGQETPEQREARIKVLE
       ... .: .:.  .. :. :: . . :                                  
CCDS75 RRDQIQAELDSKVEVLTYKKADTDLLPEEIGKLEDKVECANNALKADWERWKQNMQNDIK
              360       370       380       390       400       410




450 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:28:22 2016 done: Sat Nov  5 12:28:23 2016
 Total Scan time:  2.870 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]