Result of FASTA (ccds) for
pF1KB5334
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5334, 522 aa
1>>>pF1KB5334 522 - 522 aa - 522 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2010+/-0.00107; mu= 1.5950+/- 0.064
mean_var=229.6799+/-47.522, 0's: 0 Z-trim(112.1): 17 B-trim: 130 in 1/50
Lambda= 0.084628
statistics sampled from 12879 (12893) to 12879 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.396), width: 16
Scan time: 3.670
The best scores are: opt bits E(32554)
CCDS13907.1 FBXO7 gene_id:25793|Hs108|chr22 ( 522) 3548 446.2 4.3e-125
CCDS46695.1 FBXO7 gene_id:25793|Hs108|chr22 ( 443) 2937 371.5 1.1e-102
CCDS58806.1 FBXO7 gene_id:25793|Hs108|chr22 ( 408) 2795 354.2 1.7e-97
>>CCDS13907.1 FBXO7 gene_id:25793|Hs108|chr22 (522 aa)
initn: 3548 init1: 3548 opt: 3548 Z-score: 2359.3 bits: 446.2 E(32554): 4.3e-125
Smith-Waterman score: 3548; 99.8% identity (100.0% similar) in 522 aa overlap (1-522:1-522)
10 20 30 40 50 60
pF1KB5 MRLRVRLLKRTWPLEVPETEPTLGHLRSHLRQSLLCTWGYSSNTRFTITLNYKDPLTGDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MRLRVRLLKRTWPLEVPETEPTLGHLRSHLRQSLLCTWGYSSNTRFTITLNYKDPLTGDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ETLASYGIVSGDLICLILQDDIPAPNIPSSTDSEHSSLQNNEQPSLATSSNQTSIQDEQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS13 ETLASYGIVSGDLICLILQDDIPAPNIPSSTDSEHSSLQNNEQPSLATSSNQTSMQDEQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 SDSFQGQAAQSGVWNDDSMLGPSQNFEAESIQDNAHMAEGTGFYPSEPMLCSESVEGQVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SDSFQGQAAQSGVWNDDSMLGPSQNFEAESIQDNAHMAEGTGFYPSEPMLCSESVEGQVP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 HSLETLYQSADCSDANDALIVLIHLLMLESGYIPQGTEAKALSMPEKWKLSGVYKLQYMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HSLETLYQSADCSDANDALIVLIHLLMLESGYIPQGTEAKALSMPEKWKLSGVYKLQYMH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 PLCEGSSATLTCVPLGNLIVVNATLKINNEIRSVKRLQLLPESFICKEKLGENVANIYKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PLCEGSSATLTCVPLGNLIVVNATLKINNEIRSVKRLQLLPESFICKEKLGENVANIYKD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 LQKLSRLFKDQLVYPLLAFTRQALNLPDVFGLVVLPLELKLRIFRLLDVRSVLSLSAVCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LQKLSRLFKDQLVYPLLAFTRQALNLPDVFGLVVLPLELKLRIFRLLDVRSVLSLSAVCR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 DLFTASNDPLLWRFLYLRDFRDNTVRVQDTDWKELYRKRHIQRKESPKGRFVMLLPSSTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DLFTASNDPLLWRFLYLRDFRDNTVRVQDTDWKELYRKRHIQRKESPKGRFVMLLPSSTH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 TIPFYPNPLHPRPFPSSRLPPGIIGGEYDQRPTLPYVGDPISSLIPGPGETPSQFPPLRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TIPFYPNPLHPRPFPSSRLPPGIIGGEYDQRPTLPYVGDPISSLIPGPGETPSQFPPLRP
430 440 450 460 470 480
490 500 510 520
pF1KB5 RFDPVGPLPGPNPILPGRGGPNDRFPFRPSRGRPTDGRLSFM
::::::::::::::::::::::::::::::::::::::::::
CCDS13 RFDPVGPLPGPNPILPGRGGPNDRFPFRPSRGRPTDGRLSFM
490 500 510 520
>>CCDS46695.1 FBXO7 gene_id:25793|Hs108|chr22 (443 aa)
initn: 2937 init1: 2937 opt: 2937 Z-score: 1957.1 bits: 371.5 E(32554): 1.1e-102
Smith-Waterman score: 2937; 99.8% identity (100.0% similar) in 431 aa overlap (92-522:13-443)
70 80 90 100 110 120
pF1KB5 TLASYGIVSGDLICLILQDDIPAPNIPSSTDSEHSSLQNNEQPSLATSSNQTSIQDEQPS
:::::::::::::::::::::::.::::::
CCDS46 MARPPGGSGPLLDSEHSSLQNNEQPSLATSSNQTSMQDEQPS
10 20 30 40
130 140 150 160 170 180
pF1KB5 DSFQGQAAQSGVWNDDSMLGPSQNFEAESIQDNAHMAEGTGFYPSEPMLCSESVEGQVPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DSFQGQAAQSGVWNDDSMLGPSQNFEAESIQDNAHMAEGTGFYPSEPMLCSESVEGQVPH
50 60 70 80 90 100
190 200 210 220 230 240
pF1KB5 SLETLYQSADCSDANDALIVLIHLLMLESGYIPQGTEAKALSMPEKWKLSGVYKLQYMHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SLETLYQSADCSDANDALIVLIHLLMLESGYIPQGTEAKALSMPEKWKLSGVYKLQYMHP
110 120 130 140 150 160
250 260 270 280 290 300
pF1KB5 LCEGSSATLTCVPLGNLIVVNATLKINNEIRSVKRLQLLPESFICKEKLGENVANIYKDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LCEGSSATLTCVPLGNLIVVNATLKINNEIRSVKRLQLLPESFICKEKLGENVANIYKDL
170 180 190 200 210 220
310 320 330 340 350 360
pF1KB5 QKLSRLFKDQLVYPLLAFTRQALNLPDVFGLVVLPLELKLRIFRLLDVRSVLSLSAVCRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QKLSRLFKDQLVYPLLAFTRQALNLPDVFGLVVLPLELKLRIFRLLDVRSVLSLSAVCRD
230 240 250 260 270 280
370 380 390 400 410 420
pF1KB5 LFTASNDPLLWRFLYLRDFRDNTVRVQDTDWKELYRKRHIQRKESPKGRFVMLLPSSTHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LFTASNDPLLWRFLYLRDFRDNTVRVQDTDWKELYRKRHIQRKESPKGRFVMLLPSSTHT
290 300 310 320 330 340
430 440 450 460 470 480
pF1KB5 IPFYPNPLHPRPFPSSRLPPGIIGGEYDQRPTLPYVGDPISSLIPGPGETPSQFPPLRPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IPFYPNPLHPRPFPSSRLPPGIIGGEYDQRPTLPYVGDPISSLIPGPGETPSQFPPLRPR
350 360 370 380 390 400
490 500 510 520
pF1KB5 FDPVGPLPGPNPILPGRGGPNDRFPFRPSRGRPTDGRLSFM
:::::::::::::::::::::::::::::::::::::::::
CCDS46 FDPVGPLPGPNPILPGRGGPNDRFPFRPSRGRPTDGRLSFM
410 420 430 440
>>CCDS58806.1 FBXO7 gene_id:25793|Hs108|chr22 (408 aa)
initn: 2795 init1: 2795 opt: 2795 Z-score: 1863.9 bits: 354.2 E(32554): 1.7e-97
Smith-Waterman score: 2795; 99.8% identity (100.0% similar) in 408 aa overlap (115-522:1-408)
90 100 110 120 130 140
pF1KB5 PNIPSSTDSEHSSLQNNEQPSLATSSNQTSIQDEQPSDSFQGQAAQSGVWNDDSMLGPSQ
.:::::::::::::::::::::::::::::
CCDS58 MQDEQPSDSFQGQAAQSGVWNDDSMLGPSQ
10 20 30
150 160 170 180 190 200
pF1KB5 NFEAESIQDNAHMAEGTGFYPSEPMLCSESVEGQVPHSLETLYQSADCSDANDALIVLIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 NFEAESIQDNAHMAEGTGFYPSEPMLCSESVEGQVPHSLETLYQSADCSDANDALIVLIH
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB5 LLMLESGYIPQGTEAKALSMPEKWKLSGVYKLQYMHPLCEGSSATLTCVPLGNLIVVNAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LLMLESGYIPQGTEAKALSMPEKWKLSGVYKLQYMHPLCEGSSATLTCVPLGNLIVVNAT
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB5 LKINNEIRSVKRLQLLPESFICKEKLGENVANIYKDLQKLSRLFKDQLVYPLLAFTRQAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LKINNEIRSVKRLQLLPESFICKEKLGENVANIYKDLQKLSRLFKDQLVYPLLAFTRQAL
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB5 NLPDVFGLVVLPLELKLRIFRLLDVRSVLSLSAVCRDLFTASNDPLLWRFLYLRDFRDNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 NLPDVFGLVVLPLELKLRIFRLLDVRSVLSLSAVCRDLFTASNDPLLWRFLYLRDFRDNT
220 230 240 250 260 270
390 400 410 420 430 440
pF1KB5 VRVQDTDWKELYRKRHIQRKESPKGRFVMLLPSSTHTIPFYPNPLHPRPFPSSRLPPGII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VRVQDTDWKELYRKRHIQRKESPKGRFVMLLPSSTHTIPFYPNPLHPRPFPSSRLPPGII
280 290 300 310 320 330
450 460 470 480 490 500
pF1KB5 GGEYDQRPTLPYVGDPISSLIPGPGETPSQFPPLRPRFDPVGPLPGPNPILPGRGGPNDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GGEYDQRPTLPYVGDPISSLIPGPGETPSQFPPLRPRFDPVGPLPGPNPILPGRGGPNDR
340 350 360 370 380 390
510 520
pF1KB5 FPFRPSRGRPTDGRLSFM
::::::::::::::::::
CCDS58 FPFRPSRGRPTDGRLSFM
400
522 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 17:11:35 2016 done: Thu Nov 3 17:11:36 2016
Total Scan time: 3.670 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]