Result of FASTA (omim) for
pF1KB5334
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5334, 522 aa
1>>>pF1KB5334 522 - 522 aa - 522 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.9605+/-0.000416; mu= 3.3489+/- 0.026
mean_var=257.5553+/-54.059, 0's: 0 Z-trim(119.5): 21 B-trim: 667 in 1/57
Lambda= 0.079917
statistics sampled from 33599 (33620) to 33599 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.394), width: 16
Scan time: 11.300
The best scores are: opt bits E(85289)
NP_036311 (OMIM: 260300,605648) F-box only protein ( 522) 3548 422.5 1.6e-117
NP_001028196 (OMIM: 260300,605648) F-box only prot ( 443) 2937 351.9 2.2e-96
NP_001244919 (OMIM: 260300,605648) F-box only prot ( 408) 2795 335.5 1.8e-91
XP_011528408 (OMIM: 260300,605648) PREDICTED: F-bo ( 366) 2508 302.4 1.5e-81
>>NP_036311 (OMIM: 260300,605648) F-box only protein 7 i (522 aa)
initn: 3548 init1: 3548 opt: 3548 Z-score: 2231.0 bits: 422.5 E(85289): 1.6e-117
Smith-Waterman score: 3548; 99.8% identity (100.0% similar) in 522 aa overlap (1-522:1-522)
10 20 30 40 50 60
pF1KB5 MRLRVRLLKRTWPLEVPETEPTLGHLRSHLRQSLLCTWGYSSNTRFTITLNYKDPLTGDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MRLRVRLLKRTWPLEVPETEPTLGHLRSHLRQSLLCTWGYSSNTRFTITLNYKDPLTGDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ETLASYGIVSGDLICLILQDDIPAPNIPSSTDSEHSSLQNNEQPSLATSSNQTSIQDEQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_036 ETLASYGIVSGDLICLILQDDIPAPNIPSSTDSEHSSLQNNEQPSLATSSNQTSMQDEQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 SDSFQGQAAQSGVWNDDSMLGPSQNFEAESIQDNAHMAEGTGFYPSEPMLCSESVEGQVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SDSFQGQAAQSGVWNDDSMLGPSQNFEAESIQDNAHMAEGTGFYPSEPMLCSESVEGQVP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 HSLETLYQSADCSDANDALIVLIHLLMLESGYIPQGTEAKALSMPEKWKLSGVYKLQYMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 HSLETLYQSADCSDANDALIVLIHLLMLESGYIPQGTEAKALSMPEKWKLSGVYKLQYMH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 PLCEGSSATLTCVPLGNLIVVNATLKINNEIRSVKRLQLLPESFICKEKLGENVANIYKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PLCEGSSATLTCVPLGNLIVVNATLKINNEIRSVKRLQLLPESFICKEKLGENVANIYKD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 LQKLSRLFKDQLVYPLLAFTRQALNLPDVFGLVVLPLELKLRIFRLLDVRSVLSLSAVCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LQKLSRLFKDQLVYPLLAFTRQALNLPDVFGLVVLPLELKLRIFRLLDVRSVLSLSAVCR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 DLFTASNDPLLWRFLYLRDFRDNTVRVQDTDWKELYRKRHIQRKESPKGRFVMLLPSSTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DLFTASNDPLLWRFLYLRDFRDNTVRVQDTDWKELYRKRHIQRKESPKGRFVMLLPSSTH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 TIPFYPNPLHPRPFPSSRLPPGIIGGEYDQRPTLPYVGDPISSLIPGPGETPSQFPPLRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TIPFYPNPLHPRPFPSSRLPPGIIGGEYDQRPTLPYVGDPISSLIPGPGETPSQFPPLRP
430 440 450 460 470 480
490 500 510 520
pF1KB5 RFDPVGPLPGPNPILPGRGGPNDRFPFRPSRGRPTDGRLSFM
::::::::::::::::::::::::::::::::::::::::::
NP_036 RFDPVGPLPGPNPILPGRGGPNDRFPFRPSRGRPTDGRLSFM
490 500 510 520
>>NP_001028196 (OMIM: 260300,605648) F-box only protein (443 aa)
initn: 2937 init1: 2937 opt: 2937 Z-score: 1851.2 bits: 351.9 E(85289): 2.2e-96
Smith-Waterman score: 2937; 99.8% identity (100.0% similar) in 431 aa overlap (92-522:13-443)
70 80 90 100 110 120
pF1KB5 TLASYGIVSGDLICLILQDDIPAPNIPSSTDSEHSSLQNNEQPSLATSSNQTSIQDEQPS
:::::::::::::::::::::::.::::::
NP_001 MARPPGGSGPLLDSEHSSLQNNEQPSLATSSNQTSMQDEQPS
10 20 30 40
130 140 150 160 170 180
pF1KB5 DSFQGQAAQSGVWNDDSMLGPSQNFEAESIQDNAHMAEGTGFYPSEPMLCSESVEGQVPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSFQGQAAQSGVWNDDSMLGPSQNFEAESIQDNAHMAEGTGFYPSEPMLCSESVEGQVPH
50 60 70 80 90 100
190 200 210 220 230 240
pF1KB5 SLETLYQSADCSDANDALIVLIHLLMLESGYIPQGTEAKALSMPEKWKLSGVYKLQYMHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLETLYQSADCSDANDALIVLIHLLMLESGYIPQGTEAKALSMPEKWKLSGVYKLQYMHP
110 120 130 140 150 160
250 260 270 280 290 300
pF1KB5 LCEGSSATLTCVPLGNLIVVNATLKINNEIRSVKRLQLLPESFICKEKLGENVANIYKDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCEGSSATLTCVPLGNLIVVNATLKINNEIRSVKRLQLLPESFICKEKLGENVANIYKDL
170 180 190 200 210 220
310 320 330 340 350 360
pF1KB5 QKLSRLFKDQLVYPLLAFTRQALNLPDVFGLVVLPLELKLRIFRLLDVRSVLSLSAVCRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKLSRLFKDQLVYPLLAFTRQALNLPDVFGLVVLPLELKLRIFRLLDVRSVLSLSAVCRD
230 240 250 260 270 280
370 380 390 400 410 420
pF1KB5 LFTASNDPLLWRFLYLRDFRDNTVRVQDTDWKELYRKRHIQRKESPKGRFVMLLPSSTHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFTASNDPLLWRFLYLRDFRDNTVRVQDTDWKELYRKRHIQRKESPKGRFVMLLPSSTHT
290 300 310 320 330 340
430 440 450 460 470 480
pF1KB5 IPFYPNPLHPRPFPSSRLPPGIIGGEYDQRPTLPYVGDPISSLIPGPGETPSQFPPLRPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPFYPNPLHPRPFPSSRLPPGIIGGEYDQRPTLPYVGDPISSLIPGPGETPSQFPPLRPR
350 360 370 380 390 400
490 500 510 520
pF1KB5 FDPVGPLPGPNPILPGRGGPNDRFPFRPSRGRPTDGRLSFM
:::::::::::::::::::::::::::::::::::::::::
NP_001 FDPVGPLPGPNPILPGRGGPNDRFPFRPSRGRPTDGRLSFM
410 420 430 440
>>NP_001244919 (OMIM: 260300,605648) F-box only protein (408 aa)
initn: 2795 init1: 2795 opt: 2795 Z-score: 1763.2 bits: 335.5 E(85289): 1.8e-91
Smith-Waterman score: 2795; 99.8% identity (100.0% similar) in 408 aa overlap (115-522:1-408)
90 100 110 120 130 140
pF1KB5 PNIPSSTDSEHSSLQNNEQPSLATSSNQTSIQDEQPSDSFQGQAAQSGVWNDDSMLGPSQ
.:::::::::::::::::::::::::::::
NP_001 MQDEQPSDSFQGQAAQSGVWNDDSMLGPSQ
10 20 30
150 160 170 180 190 200
pF1KB5 NFEAESIQDNAHMAEGTGFYPSEPMLCSESVEGQVPHSLETLYQSADCSDANDALIVLIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFEAESIQDNAHMAEGTGFYPSEPMLCSESVEGQVPHSLETLYQSADCSDANDALIVLIH
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB5 LLMLESGYIPQGTEAKALSMPEKWKLSGVYKLQYMHPLCEGSSATLTCVPLGNLIVVNAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLMLESGYIPQGTEAKALSMPEKWKLSGVYKLQYMHPLCEGSSATLTCVPLGNLIVVNAT
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB5 LKINNEIRSVKRLQLLPESFICKEKLGENVANIYKDLQKLSRLFKDQLVYPLLAFTRQAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKINNEIRSVKRLQLLPESFICKEKLGENVANIYKDLQKLSRLFKDQLVYPLLAFTRQAL
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB5 NLPDVFGLVVLPLELKLRIFRLLDVRSVLSLSAVCRDLFTASNDPLLWRFLYLRDFRDNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLPDVFGLVVLPLELKLRIFRLLDVRSVLSLSAVCRDLFTASNDPLLWRFLYLRDFRDNT
220 230 240 250 260 270
390 400 410 420 430 440
pF1KB5 VRVQDTDWKELYRKRHIQRKESPKGRFVMLLPSSTHTIPFYPNPLHPRPFPSSRLPPGII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRVQDTDWKELYRKRHIQRKESPKGRFVMLLPSSTHTIPFYPNPLHPRPFPSSRLPPGII
280 290 300 310 320 330
450 460 470 480 490 500
pF1KB5 GGEYDQRPTLPYVGDPISSLIPGPGETPSQFPPLRPRFDPVGPLPGPNPILPGRGGPNDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGEYDQRPTLPYVGDPISSLIPGPGETPSQFPPLRPRFDPVGPLPGPNPILPGRGGPNDR
340 350 360 370 380 390
510 520
pF1KB5 FPFRPSRGRPTDGRLSFM
::::::::::::::::::
NP_001 FPFRPSRGRPTDGRLSFM
400
>>XP_011528408 (OMIM: 260300,605648) PREDICTED: F-box on (366 aa)
initn: 2508 init1: 2508 opt: 2508 Z-score: 1585.0 bits: 302.4 E(85289): 1.5e-81
Smith-Waterman score: 2508; 100.0% identity (100.0% similar) in 366 aa overlap (157-522:1-366)
130 140 150 160 170 180
pF1KB5 QAAQSGVWNDDSMLGPSQNFEAESIQDNAHMAEGTGFYPSEPMLCSESVEGQVPHSLETL
::::::::::::::::::::::::::::::
XP_011 MAEGTGFYPSEPMLCSESVEGQVPHSLETL
10 20 30
190 200 210 220 230 240
pF1KB5 YQSADCSDANDALIVLIHLLMLESGYIPQGTEAKALSMPEKWKLSGVYKLQYMHPLCEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YQSADCSDANDALIVLIHLLMLESGYIPQGTEAKALSMPEKWKLSGVYKLQYMHPLCEGS
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB5 SATLTCVPLGNLIVVNATLKINNEIRSVKRLQLLPESFICKEKLGENVANIYKDLQKLSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SATLTCVPLGNLIVVNATLKINNEIRSVKRLQLLPESFICKEKLGENVANIYKDLQKLSR
100 110 120 130 140 150
310 320 330 340 350 360
pF1KB5 LFKDQLVYPLLAFTRQALNLPDVFGLVVLPLELKLRIFRLLDVRSVLSLSAVCRDLFTAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LFKDQLVYPLLAFTRQALNLPDVFGLVVLPLELKLRIFRLLDVRSVLSLSAVCRDLFTAS
160 170 180 190 200 210
370 380 390 400 410 420
pF1KB5 NDPLLWRFLYLRDFRDNTVRVQDTDWKELYRKRHIQRKESPKGRFVMLLPSSTHTIPFYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NDPLLWRFLYLRDFRDNTVRVQDTDWKELYRKRHIQRKESPKGRFVMLLPSSTHTIPFYP
220 230 240 250 260 270
430 440 450 460 470 480
pF1KB5 NPLHPRPFPSSRLPPGIIGGEYDQRPTLPYVGDPISSLIPGPGETPSQFPPLRPRFDPVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NPLHPRPFPSSRLPPGIIGGEYDQRPTLPYVGDPISSLIPGPGETPSQFPPLRPRFDPVG
280 290 300 310 320 330
490 500 510 520
pF1KB5 PLPGPNPILPGRGGPNDRFPFRPSRGRPTDGRLSFM
::::::::::::::::::::::::::::::::::::
XP_011 PLPGPNPILPGRGGPNDRFPFRPSRGRPTDGRLSFM
340 350 360
522 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 17:11:36 2016 done: Thu Nov 3 17:11:38 2016
Total Scan time: 11.300 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]