FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5339, 534 aa
  1>>>pF1KB5339 534 - 534 aa - 534 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5365+/-0.00078; mu= 9.6995+/- 0.048
 mean_var=130.4895+/-25.426, 0's: 0 Z-trim(113.2): 21  B-trim: 0 in 0/51
 Lambda= 0.112276
 statistics sampled from 13833 (13847) to 13833 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.425), width:  16
 Scan time:  3.800

The best scores are:                                      opt bits E(32554)
CCDS12420.1 URI1 gene_id:8725|Hs108|chr19          ( 535) 3512 579.8 2.7e-165
CCDS58658.1 URI1 gene_id:8725|Hs108|chr19          ( 475) 2870 475.8 4.8e-134


>>CCDS12420.1 URI1 gene_id:8725|Hs108|chr19               (535 aa)
 initn: 2103 init1: 2103 opt: 3512  Z-score: 3081.2  bits: 579.8 E(32554): 2.7e-165
Smith-Waterman score: 3512; 99.6% identity (99.8% similar) in 535 aa overlap (1-534:1-535)

               10        20        30        40        50        60
pF1KB5 MEAPTVETPPDPSPPSAPAPVLVPLRAPDVARLREEQEKVVTNCQERIQHWKKVDNDYNA
       ::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
CCDS12 MEAPTVETPPDPSPPSAPAPALVPLRAPDVARLREEQEKVVTNCQERIQHWKKVDNDYNA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LRERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LRERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFEFKAKHRIAHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFEFKAKHRIAHK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PHSKPKTSDIFEADIANDVKSKDLLADKELWARLEELERQEELLGELDSKPDTVIANGED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PHSKPKTSDIFEADIANDVKSKDLLADKELWARLEELERQEELLGELDSKPDTVIANGED
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 TTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDD
              250       260       270       280       290       300

              310        320       330       340       350         
pF1KB5 DDDDDDDDDD-NIDDDDGDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTGKNTTLKFSE
       :::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTGKNTTLKFSE
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KB5 KKEEAKRKRKNSTGSGHSAQELPTIRTPADIYRAFVDVVNGEYVPRKSILKSRSRENSVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KKEEAKRKRKNSTGSGHSAQELPTIRTPADIYRAFVDVVNGEYVPRKSILKSRSRENSVC
              370       380       390       400       410       420

     420       430       440       450       460       470         
pF1KB5 SDTSESSAAEFDDRRGVLRSISCEEATCSDTSESILEEEPQENQKKLLPLSVTPEAFSGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SDTSESSAAEFDDRRGVLRSISCEEATCSDTSESILEEEPQENQKKLLPLSVTPEAFSGT
              430       440       450       460       470       480

     480       490       500       510       520       530    
pF1KB5 VIEKEFVSPSLTPPPAIAHPALPTIPERKEVLLEASEETGKRVSKFKAARLQQKD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VIEKEFVSPSLTPPPAIAHPALPTIPERKEVLLEASEETGKRVSKFKAARLQQKD
              490       500       510       520       530     

>>CCDS58658.1 URI1 gene_id:8725|Hs108|chr19               (475 aa)
 initn: 2994 init1: 1841 opt: 2870  Z-score: 2519.9  bits: 475.8 E(32554): 4.8e-134
Smith-Waterman score: 2870; 99.3% identity (99.8% similar) in 438 aa overlap (40-476:22-459)

      10        20        30        40        50        60         
pF1KB5 PDPSPPSAPAPVLVPLRAPDVARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLP
                                     ::::::::::::::::::::::::::::::
CCDS58          MTTWSSLQGSHVSKRALAYALVVTNCQERIQHWKKVDNDYNALRERLSTLP
                        10        20        30        40        50 

      70        80        90       100       110       120         
pF1KB5 DKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTID
              60        70        80        90       100       110 

     130       140       150       160       170       180         
pF1KB5 DLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSD
             120       130       140       150       160       170 

     190       200       210       220       230       240         
pF1KB5 IFEADIANDVKSKDLLADKELWARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 IFEADIANDVKSKDLLADKELWARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKE
             180       190       200       210       220       230 

     250       260       270       280       290       300         
pF1KB5 DRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDD
             240       250       260       270       280       290 

     310        320       330       340       350       360        
pF1KB5 D-NIDDDDGDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKR
       : ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DDNIDDDDGDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKR
             300       310       320       330       340       350 

      370       380       390       400       410       420        
pF1KB5 KNSTGSGHSAQELPTIRTPADIYRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KNSTGSGHSAQELPTIRTPADIYRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAA
             360       370       380       390       400       410 

      430       440       450       460       470       480        
pF1KB5 EFDDRRGVLRSISCEEATCSDTSESILEEEPQENQKKLLPLSVTPEAFSGTVIEKEFVSP
       ::::::::::::::::::::::::::::::::::::::::::::::..            
CCDS58 EFDDRRGVLRSISCEEATCSDTSESILEEEPQENQKKLLPLSVTPEVLRLVGYSRNLAPL
             420       430       440       450       460       470 

      490       500       510       520       530    
pF1KB5 SLTPPPAIAHPALPTIPERKEVLLEASEETGKRVSKFKAARLQQKD
                                                     
CCDS58 NVIL                                          
                                                     




534 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 17:13:01 2016 done: Thu Nov  3 17:13:02 2016
 Total Scan time:  3.800 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]