Result of FASTA (omim) for
pF1KB5344
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5344, 232 aa
1>>>pF1KB5344 232 - 232 aa - 232 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0028+/-0.000347; mu= 16.4266+/- 0.022
mean_var=82.0638+/-16.079, 0's: 0 Z-trim(116.2): 359 B-trim: 692 in 1/51
Lambda= 0.141579
statistics sampled from 26734 (27155) to 26734 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.318), width: 16
Scan time: 6.780
The best scores are: opt bits E(85289)
NP_055285 (OMIM: 609038) rho-related GTP-binding p ( 232) 1542 324.2 1.1e-88
NP_005159 (OMIM: 602924) rho-related GTP-binding p ( 244) 988 211.1 1.4e-54
NP_001241667 (OMIM: 602924) rho-related GTP-bindin ( 244) 988 211.1 1.4e-54
NP_005431 (OMIM: 601555) rho-related GTP-binding p ( 227) 831 179.0 5.8e-45
XP_011523618 (OMIM: 601555) PREDICTED: rho-related ( 234) 826 178.0 1.2e-44
XP_011523619 (OMIM: 601555) PREDICTED: rho-related ( 206) 678 147.7 1.4e-35
NP_001300870 (OMIM: 165390) transforming protein R ( 193) 550 121.5 9.9e-28
NP_001655 (OMIM: 165390) transforming protein RhoA ( 193) 550 121.5 9.9e-28
NP_001036144 (OMIM: 165380) rho-related GTP-bindin ( 193) 546 120.7 1.7e-27
NP_786886 (OMIM: 165380) rho-related GTP-binding p ( 193) 546 120.7 1.7e-27
NP_001036143 (OMIM: 165380) rho-related GTP-bindin ( 193) 546 120.7 1.7e-27
NP_004031 (OMIM: 165370) rho-related GTP-binding p ( 196) 543 120.1 2.7e-27
NP_055393 (OMIM: 605781) rho-related GTP-binding p ( 210) 526 116.7 3.1e-26
NP_002863 (OMIM: 602049,608203) ras-related C3 bot ( 192) 495 110.3 2.4e-24
NP_008839 (OMIM: 602048) ras-related C3 botulinum ( 192) 495 110.3 2.4e-24
NP_005043 (OMIM: 602050) ras-related C3 botulinum ( 192) 492 109.7 3.6e-24
NP_001300872 (OMIM: 165390) transforming protein R ( 187) 488 108.9 6.3e-24
XP_005252973 (OMIM: 179505) PREDICTED: rho-related ( 191) 467 104.6 1.2e-22
NP_001656 (OMIM: 179505) rho-related GTP-binding p ( 191) 467 104.6 1.2e-22
XP_016873208 (OMIM: 179505) PREDICTED: rho-related ( 191) 467 104.6 1.2e-22
NP_036381 (OMIM: 605857) rho-related GTP-binding p ( 205) 446 100.3 2.6e-21
NP_001303236 (OMIM: 602050) ras-related C3 botulin ( 170) 441 99.2 4.5e-21
XP_006724349 (OMIM: 602049,608203) PREDICTED: ras- ( 161) 440 99.0 5e-21
NP_067028 (OMIM: 606366) rho-related GTP-binding p ( 258) 438 98.8 9.3e-21
NP_001782 (OMIM: 116952,616737) cell division cont ( 191) 436 98.3 1e-20
NP_001034891 (OMIM: 116952,616737) cell division c ( 191) 436 98.3 1e-20
NP_426359 (OMIM: 116952,616737) cell division cont ( 191) 435 98.0 1.2e-20
NP_065714 (OMIM: 607653) rho-related GTP-binding p ( 214) 434 97.9 1.4e-20
XP_011531028 (OMIM: 605857) PREDICTED: rho-related ( 192) 402 91.3 1.2e-18
XP_016859205 (OMIM: 605857) PREDICTED: rho-related ( 172) 391 89.0 5.4e-18
XP_006720277 (OMIM: 607653) PREDICTED: rho-related ( 176) 373 85.3 7.1e-17
NP_001265293 (OMIM: 602037) rho-related GTP-bindin ( 191) 332 77.0 2.5e-14
NP_001265291 (OMIM: 602037) rho-related GTP-bindin ( 191) 332 77.0 2.5e-14
NP_001265289 (OMIM: 602037) rho-related GTP-bindin ( 191) 332 77.0 2.5e-14
NP_001265288 (OMIM: 602037) rho-related GTP-bindin ( 191) 332 77.0 2.5e-14
NP_001265294 (OMIM: 602037) rho-related GTP-bindin ( 191) 332 77.0 2.5e-14
NP_001265296 (OMIM: 602037) rho-related GTP-bindin ( 191) 332 77.0 2.5e-14
XP_011511994 (OMIM: 602037) PREDICTED: rho-related ( 191) 332 77.0 2.5e-14
XP_016863677 (OMIM: 602037) PREDICTED: rho-related ( 191) 332 77.0 2.5e-14
NP_001265297 (OMIM: 602037) rho-related GTP-bindin ( 191) 332 77.0 2.5e-14
NP_001265292 (OMIM: 602037) rho-related GTP-bindin ( 191) 332 77.0 2.5e-14
NP_001265295 (OMIM: 602037) rho-related GTP-bindin ( 191) 332 77.0 2.5e-14
NP_001265290 (OMIM: 602037) rho-related GTP-bindin ( 191) 332 77.0 2.5e-14
XP_016863678 (OMIM: 602037) PREDICTED: rho-related ( 191) 332 77.0 2.5e-14
NP_001265298 (OMIM: 602037) rho-related GTP-bindin ( 191) 332 77.0 2.5e-14
NP_004301 (OMIM: 602037) rho-related GTP-binding p ( 191) 332 77.0 2.5e-14
NP_001300873 (OMIM: 165390) transforming protein R ( 173) 310 72.5 5.2e-13
NP_061485 (OMIM: 602048) ras-related C3 botulinum ( 211) 293 69.1 6.7e-12
XP_011531030 (OMIM: 605857) PREDICTED: rho-related ( 157) 289 68.1 9.5e-12
XP_011538730 (OMIM: 607351) PREDICTED: rho-related ( 530) 290 68.9 2e-11
>>NP_055285 (OMIM: 609038) rho-related GTP-binding prote (232 aa)
initn: 1542 init1: 1542 opt: 1542 Z-score: 1712.9 bits: 324.2 E(85289): 1.1e-88
Smith-Waterman score: 1542; 100.0% identity (100.0% similar) in 232 aa overlap (1-232:1-232)
10 20 30 40 50 60
pF1KB5 MKERRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MKERRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF
130 140 150 160 170 180
190 200 210 220 230
pF1KB5 RTASMLCLNKPSPLPQKSPVRSLSKRLLHLPSRSELISSTFKKEKAKSCSIM
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RTASMLCLNKPSPLPQKSPVRSLSKRLLHLPSRSELISSTFKKEKAKSCSIM
190 200 210 220 230
>>NP_005159 (OMIM: 602924) rho-related GTP-binding prote (244 aa)
initn: 970 init1: 936 opt: 988 Z-score: 1101.1 bits: 211.1 E(85289): 1.4e-54
Smith-Waterman score: 1001; 58.2% identity (83.2% similar) in 244 aa overlap (1-232:1-244)
10 20 30 40 50
pF1KB5 MKERRAPQPVVAR----------CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY
:::::: : . .. ::.:.::: ::::::.:.:.::::.::.:::::::::
NP_005 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE
:: .: . ::.::::::::::::::::::: : ::::::.:::::::::.::.::::. :
NP_005 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB5 ILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF
: ..::.:..::.:::.:::::.:::.:::...:.:.::.:: .:::.:: :.: ::.
NP_005 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
130 140 150 160 170 180
180 190 200 210 220
pF1KB5 TSEKSIHSIFRTASMLCLNKPSPLPQKSPVRSLSKRLLHLPSRSEL--ISSTFKKEKAKS
::.:...::..:.. :.:: . ... . .::. :.::: :: ... ..:.::::
NP_005 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
190 200 210 220 230 240
230
pF1KB5 CSIM
:..:
NP_005 CTVM
>>NP_001241667 (OMIM: 602924) rho-related GTP-binding pr (244 aa)
initn: 970 init1: 936 opt: 988 Z-score: 1101.1 bits: 211.1 E(85289): 1.4e-54
Smith-Waterman score: 1001; 58.2% identity (83.2% similar) in 244 aa overlap (1-232:1-244)
10 20 30 40 50
pF1KB5 MKERRAPQPVVAR----------CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY
:::::: : . .. ::.:.::: ::::::.:.:.::::.::.:::::::::
NP_001 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE
:: .: . ::.::::::::::::::::::: : ::::::.:::::::::.::.::::. :
NP_001 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB5 ILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF
: ..::.:..::.:::.:::::.:::.:::...:.:.::.:: .:::.:: :.: ::.
NP_001 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
130 140 150 160 170 180
180 190 200 210 220
pF1KB5 TSEKSIHSIFRTASMLCLNKPSPLPQKSPVRSLSKRLLHLPSRSEL--ISSTFKKEKAKS
::.:...::..:.. :.:: . ... . .::. :.::: :: ... ..:.::::
NP_001 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
190 200 210 220 230 240
230
pF1KB5 CSIM
:..:
NP_001 CTVM
>>NP_005431 (OMIM: 601555) rho-related GTP-binding prote (227 aa)
initn: 817 init1: 792 opt: 831 Z-score: 928.2 bits: 179.0 E(85289): 5.8e-45
Smith-Waterman score: 831; 53.4% identity (82.4% similar) in 221 aa overlap (13-232:7-227)
10 20 30 40 50 60
pF1KB5 MKERRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR
:::.:.:::..:::::.:::.::: :: .::::::::::: .: ...:
NP_005 MEGQSGRCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRR
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV
.::..:::::: :::::::: : ::::::.:::::::::.::.::::. : ..::...:
NP_005 IELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF
.:.::: :.::::.:: :::.:. :...::: ..:::.:: :.: :. .::.:....:
NP_005 VLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVF
120 130 140 150 160 170
190 200 210 220 230
pF1KB5 RTASMLCLNKPSPLPQKSPVRSLSKRLLHLPSRSELIS-STFKKEKAKSCSIM
..:.. :.. ... : .: .: .: . . . ..:..::::..:
NP_005 HVATVASLGRGHRQLRRTDSRRGMQRSAQLSGRPDRGNEGEIHKDRAKSCNLM
180 190 200 210 220
>>XP_011523618 (OMIM: 601555) PREDICTED: rho-related GTP (234 aa)
initn: 812 init1: 792 opt: 826 Z-score: 922.5 bits: 178.0 E(85289): 1.2e-44
Smith-Waterman score: 826; 52.9% identity (82.4% similar) in 221 aa overlap (13-232:7-227)
10 20 30 40 50 60
pF1KB5 MKERRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR
:::.:.:::..:::::.:::.::: :: .::::::::::: .: ...:
XP_011 MEGQSGRCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRR
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV
.::..:::::: :::::::: : ::::::.:::::::::.::.::::. : ..::...:
XP_011 IELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF
.:.::: :.::::.:: :::.:. :...::: ..:::.:: :.: :. .::.:....:
XP_011 VLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVF
120 130 140 150 160 170
190 200 210 220 230
pF1KB5 RTASMLCLNKPSPLPQKSPVRSLSKRLLHLPSRSELIS-STFKKEKAKSCSIM
..:.. :.. ... : .: .: .: . . . ..:..::::...
XP_011 HVATVASLGRGHRQLRRTDSRRGMQRSAQLSGRPDRGNEGEIHKDRAKSCNLIYSHTSNL
180 190 200 210 220 230
>>XP_011523619 (OMIM: 601555) PREDICTED: rho-related GTP (206 aa)
initn: 662 init1: 642 opt: 678 Z-score: 759.8 bits: 147.7 E(85289): 1.4e-35
Smith-Waterman score: 678; 50.3% identity (80.8% similar) in 193 aa overlap (41-232:7-199)
20 30 40 50 60 70
pF1KB5 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG
.::::::::::: .: ...:.::..:::::
XP_011 MGMGTRSYVPTVFENYTASFEIDKRRIELNMWDTSG
10 20 30
80 90 100 110 120 130
pF1KB5 SPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR
: :::::::: : ::::::.:::::::::.::.::::. : ..::...:.:.::: :.:
XP_011 SSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB5 TDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK
:::.:: :::.:. :...::: ..:::.:: :.: :. .::.:....:..:.. :..
XP_011 TDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGR
100 110 120 130 140 150
200 210 220 230
pF1KB5 PSPLPQKSPVRSLSKRLLHLPSRSELIS-STFKKEKAKSCSIM
... : .: .: .: . . . ..:..::::...
XP_011 GHRQLRRTDSRRGMQRSAQLSGRPDRGNEGEIHKDRAKSCNLIYSHTSNL
160 170 180 190 200
>>NP_001300870 (OMIM: 165390) transforming protein RhoA (193 aa)
initn: 554 init1: 537 opt: 550 Z-score: 618.9 bits: 121.5 E(85289): 9.9e-28
Smith-Waterman score: 550; 45.9% identity (77.9% similar) in 172 aa overlap (13-184:5-175)
10 20 30 40 50 60
pF1KB5 MKERRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR
: :::.::: :::: .: :..:: .::.:::::::::.: .:.. ..
NP_001 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQ
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV
:::.::::.:. :: .::: : :.:..:.::.:. :..... .:: :. .::.. .
NP_001 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF
.:.: : :::.: : ::...:: :.. :.: .:...:: :.: :: :.. ... .:
NP_001 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD-GVREVF
120 130 140 150 160 170
190 200 210 220 230
pF1KB5 RTASMLCLNKPSPLPQKSPVRSLSKRLLHLPSRSELISSTFKKEKAKSCSIM
. :.
NP_001 EMATRAALQARRGKKKSGCLVL
180 190
>>NP_001655 (OMIM: 165390) transforming protein RhoA iso (193 aa)
initn: 554 init1: 537 opt: 550 Z-score: 618.9 bits: 121.5 E(85289): 9.9e-28
Smith-Waterman score: 550; 45.9% identity (77.9% similar) in 172 aa overlap (13-184:5-175)
10 20 30 40 50 60
pF1KB5 MKERRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR
: :::.::: :::: .: :..:: .::.:::::::::.: .:.. ..
NP_001 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQ
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV
:::.::::.:. :: .::: : :.:..:.::.:. :..... .:: :. .::.. .
NP_001 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF
.:.: : :::.: : ::...:: :.. :.: .:...:: :.: :: :.. ... .:
NP_001 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD-GVREVF
120 130 140 150 160 170
190 200 210 220 230
pF1KB5 RTASMLCLNKPSPLPQKSPVRSLSKRLLHLPSRSELISSTFKKEKAKSCSIM
. :.
NP_001 EMATRAALQARRGKKKSGCLVL
180 190
>>NP_001036144 (OMIM: 165380) rho-related GTP-binding pr (193 aa)
initn: 550 init1: 533 opt: 546 Z-score: 614.4 bits: 120.7 E(85289): 1.7e-27
Smith-Waterman score: 546; 46.5% identity (76.2% similar) in 172 aa overlap (13-184:5-175)
10 20 30 40 50 60
pF1KB5 MKERRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR
: :::.::: :::: .: :..:: .::.::::::::: : .:.. ..
NP_001 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQ
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV
:::.::::.:. :: .::: : :.:..:.::.:. :..... .:: :. .::.. .
NP_001 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF
.:.: : ::: : : ::...:: :. :.: .:....: ::: :: :.: ... .:
NP_001 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE-GVREVF
120 130 140 150 160 170
190 200 210 220 230
pF1KB5 RTASMLCLNKPSPLPQKSPVRSLSKRLLHLPSRSELISSTFKKEKAKSCSIM
. :.
NP_001 EMATRAGLQVRKNKRRRGCPIL
180 190
>>NP_786886 (OMIM: 165380) rho-related GTP-binding prote (193 aa)
initn: 550 init1: 533 opt: 546 Z-score: 614.4 bits: 120.7 E(85289): 1.7e-27
Smith-Waterman score: 546; 46.5% identity (76.2% similar) in 172 aa overlap (13-184:5-175)
10 20 30 40 50 60
pF1KB5 MKERRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR
: :::.::: :::: .: :..:: .::.::::::::: : .:.. ..
NP_786 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQ
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV
:::.::::.:. :: .::: : :.:..:.::.:. :..... .:: :. .::.. .
NP_786 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF
.:.: : ::: : : ::...:: :. :.: .:....: ::: :: :.: ... .:
NP_786 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE-GVREVF
120 130 140 150 160 170
190 200 210 220 230
pF1KB5 RTASMLCLNKPSPLPQKSPVRSLSKRLLHLPSRSELISSTFKKEKAKSCSIM
. :.
NP_786 EMATRAGLQVRKNKRRRGCPIL
180 190
232 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:38:38 2016 done: Fri Nov 4 03:38:39 2016
Total Scan time: 6.780 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]