FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB5349, 376 aa 1>>>pF1KB5349 376 - 376 aa - 376 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5299+/-0.000902; mu= 15.0801+/- 0.054 mean_var=62.7174+/-12.733, 0's: 0 Z-trim(104.6): 15 B-trim: 3 in 1/50 Lambda= 0.161950 statistics sampled from 7956 (7964) to 7956 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.245), width: 16 Scan time: 2.290 The best scores are: opt bits E(32554) CCDS7692.1 PSMD13 gene_id:5719|Hs108|chr11 ( 376) 2468 585.4 2.7e-167 CCDS44504.1 PSMD13 gene_id:5719|Hs108|chr11 ( 378) 2170 515.8 2.5e-146 >>CCDS7692.1 PSMD13 gene_id:5719|Hs108|chr11 (376 aa) initn: 2468 init1: 2468 opt: 2468 Z-score: 3116.9 bits: 585.4 E(32554): 2.7e-167 Smith-Waterman score: 2468; 99.7% identity (100.0% similar) in 376 aa overlap (1-376:1-376) 10 20 30 40 50 60 pF1KB5 MKDVPGFLQQSQSSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 MKDVPGFLQQSQNSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 LKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 LKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDV 310 320 330 340 350 360 370 pF1KB5 KSMEMLVEHQAHDILT :::::::::::::::: CCDS76 KSMEMLVEHQAHDILT 370 >>CCDS44504.1 PSMD13 gene_id:5719|Hs108|chr11 (378 aa) initn: 2199 init1: 1990 opt: 2170 Z-score: 2740.6 bits: 515.8 E(32554): 2.5e-146 Smith-Waterman score: 2170; 89.9% identity (94.2% similar) in 378 aa overlap (1-376:1-378) 10 20 30 40 50 pF1KB5 MKDVPGFLQQSQSSGPGQPAVWHRLEELYTKKLWHQLT--LQVLDFVQDPCFAQGDGLIK ::::::::::::.::::::::::::::::::.. . :. :.. ... ... . CCDS44 MKDVPGFLQQSQNSGPGQPAVWHRLEELYTKNFMKTLSVNLNTGKSLSSVFHFENECIDA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB5 LYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAI . . : ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 RRCSKAGGFYFRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAI 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB5 GALKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 GALKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALR 130 140 150 160 170 180 180 190 200 210 220 230 pF1KB5 FLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 FLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLY 190 200 210 220 230 240 240 250 260 270 280 290 pF1KB5 AFNSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 AFNSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAK 250 260 270 280 290 300 300 310 320 330 340 350 pF1KB5 SAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 SAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCT 310 320 330 340 350 360 360 370 pF1KB5 DVKSMEMLVEHQAHDILT :::::::::::::::::: CCDS44 DVKSMEMLVEHQAHDILT 370 376 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 12:29:22 2016 done: Sat Nov 5 12:29:23 2016 Total Scan time: 2.290 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]