FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5359, 183 aa
  1>>>pF1KB5359 183 - 183 aa - 183 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9128+/-0.000765; mu= 10.5382+/- 0.046
 mean_var=86.9116+/-16.801, 0's: 0 Z-trim(110.2): 32  B-trim: 13 in 1/49
 Lambda= 0.137574
 statistics sampled from 11425 (11457) to 11425 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.352), width:  16
 Scan time:  2.030

The best scores are:                                      opt bits E(32554)
CCDS5398.1 CBX3 gene_id:11335|Hs108|chr7           ( 183) 1221 251.5 2.1e-67
CCDS11525.1 CBX1 gene_id:10951|Hs108|chr17         ( 185)  848 177.5 4.1e-45
CCDS8875.1 CBX5 gene_id:23468|Hs108|chr12          ( 191)  470 102.5 1.6e-22


>>CCDS5398.1 CBX3 gene_id:11335|Hs108|chr7                (183 aa)
 initn: 1221 init1: 1221 opt: 1221  Z-score: 1323.5  bits: 251.5 E(32554): 2.1e-67
Smith-Waterman score: 1221; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)

               10        20        30        40        50        60
pF1KB5 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 WEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED
              130       140       150       160       170       180

          
pF1KB5 EAQ
       :::
CCDS53 EAQ
          

>>CCDS11525.1 CBX1 gene_id:10951|Hs108|chr17              (185 aa)
 initn: 877 init1: 449 opt: 848  Z-score: 923.3  bits: 177.5 E(32554): 4.1e-45
Smith-Waterman score: 848; 73.6% identity (88.2% similar) in 178 aa overlap (11-181:1-178)

               10         20        30        40        50         
pF1KB5 MASNKTTLQKMGKKQNGKS-KKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN
                 :::::: :. ..: : : ::.:::::::::::.:::::.::::::.: ::
CCDS11           MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDN
                         10        20        30        40        50

      60        70        80           90         100       110    
pF1KB5 TWEPEENLDCPELIEAFLNSQKAGKEKD---GTKRKSLSDSES--DDSKSKKKRDAADKP
       :::::::::::.::  ::.:::...: :   : :::. ::::.  ..:: :::.. ..::
CCDS11 TWEPEENLDCPDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKP
               60        70        80        90       100       110

          120       130       140       150       160       170    
pF1KB5 RGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTW
       :::::::.:::::::::::::::::::::.::::::: :::::.::::.::.::::::::
CCDS11 RGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTW
              120       130       140       150       160       170

           180        
pF1KB5 HSCP-EDEAQ     
       :: : ::.       
CCDS11 HSYPSEDDDKKDDKN
              180     

>>CCDS8875.1 CBX5 gene_id:23468|Hs108|chr12               (191 aa)
 initn: 449 init1: 449 opt: 470  Z-score: 517.7  bits: 102.5 E(32554): 1.6e-22
Smith-Waterman score: 746; 63.9% identity (80.0% similar) in 180 aa overlap (11-180:1-180)

               10        20        30        40        50        60
pF1KB5 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT
                 :::: .  . .    . ::.:::::::::::.:.:::.::::::..  ::
CCDS88           MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNT
                         10        20        30        40        50

               70        80                 90       100       110 
pF1KB5 WEPEENLDCPELIEAFLNSQKAGKE---------KDGTKRKSLSDSESDDSKSKKKRDAA
       ::::.::::::::  :... :  ::         ....::::  .. .:: ::::::. .
CCDS88 WEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQS
               60        70        80        90       100       110

              120       130       140       150       160       170
pF1KB5 -DKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEE
        :  ::: :::.::.::::::: :.:::::::::.::::::::::::.::::::::::::
CCDS88 NDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEE
              120       130       140       150       160       170

              180           
pF1KB5 RLTWHSCPEDEAQ        
       :::::. :::           
CCDS88 RLTWHAYPEDAENKEKETAKS
              180       190 




183 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:40:33 2016 done: Fri Nov  4 03:40:33 2016
 Total Scan time:  2.030 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]