Result of FASTA (omim) for
pF1KB5359
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5359, 183 aa
1>>>pF1KB5359 183 - 183 aa - 183 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0468+/-0.000311; mu= 9.9300+/- 0.020
mean_var=95.4865+/-18.700, 0's: 0 Z-trim(117.6): 41 B-trim: 67 in 1/49
Lambda= 0.131251
statistics sampled from 29623 (29669) to 29623 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.348), width: 16
Scan time: 5.950
The best scores are: opt bits E(85289)
NP_009207 (OMIM: 604477) chromobox protein homolog ( 183) 1221 240.7 9.6e-64
XP_005249668 (OMIM: 604477) PREDICTED: chromobox p ( 183) 1221 240.7 9.6e-64
NP_057671 (OMIM: 604477) chromobox protein homolog ( 183) 1221 240.7 9.6e-64
NP_006798 (OMIM: 604511) chromobox protein homolog ( 185) 848 170.1 1.8e-42
NP_001120700 (OMIM: 604511) chromobox protein homo ( 185) 848 170.1 1.8e-42
NP_001120793 (OMIM: 604478) chromobox protein homo ( 191) 470 98.6 6.4e-21
NP_036249 (OMIM: 604478) chromobox protein homolog ( 191) 470 98.6 6.4e-21
NP_001120794 (OMIM: 604478) chromobox protein homo ( 191) 470 98.6 6.4e-21
XP_011513299 (OMIM: 603778) PREDICTED: chromodomai ( 522) 202 48.1 2.7e-05
NP_004815 (OMIM: 603778) chromodomain Y-like prote ( 544) 202 48.1 2.8e-05
NP_005180 (OMIM: 602770,613080) chromobox protein ( 532) 199 47.5 4.1e-05
XP_011523684 (OMIM: 602770,613080) PREDICTED: chro ( 586) 199 47.6 4.4e-05
NP_059990 (OMIM: 611626) M-phase phosphoprotein 8 ( 860) 200 47.9 5.2e-05
XP_011533426 (OMIM: 611626) PREDICTED: M-phase pho ( 879) 200 47.9 5.3e-05
NP_116036 (OMIM: 602770,613080) chromobox protein ( 211) 190 45.6 6.3e-05
NP_003646 (OMIM: 603079) E3 SUMO-protein ligase CB ( 560) 194 46.6 8.1e-05
NP_001180355 (OMIM: 606503) histone-lysine N-methy ( 230) 185 44.6 0.00013
NP_001180353 (OMIM: 606503) histone-lysine N-methy ( 410) 186 45.0 0.00018
XP_006724240 (OMIM: 608457) PREDICTED: chromobox p ( 192) 181 43.8 0.00019
XP_016884168 (OMIM: 608457) PREDICTED: chromobox p ( 250) 182 44.1 0.00021
NP_783640 (OMIM: 608457) chromobox protein homolog ( 251) 182 44.1 0.00021
XP_005261470 (OMIM: 608457) PREDICTED: chromobox p ( 158) 179 43.4 0.00021
XP_011528327 (OMIM: 608457) PREDICTED: chromobox p ( 165) 174 42.5 0.00043
XP_006724241 (OMIM: 608457) PREDICTED: chromobox p ( 166) 174 42.5 0.00043
XP_006724239 (OMIM: 608457) PREDICTED: chromobox p ( 200) 174 42.5 0.0005
XP_006724238 (OMIM: 608457) PREDICTED: chromobox p ( 258) 174 42.6 0.00061
XP_006724237 (OMIM: 608457) PREDICTED: chromobox p ( 259) 174 42.6 0.00061
XP_011529814 (OMIM: 400016,415000) PREDICTED: test ( 470) 177 43.3 0.00066
NP_733841 (OMIM: 400016,415000) testis-specific ch ( 540) 177 43.4 0.00074
NP_004816 (OMIM: 400018,415000) testis-specific ch ( 541) 177 43.4 0.00074
NP_004671 (OMIM: 400016,415000) testis-specific ch ( 554) 177 43.4 0.00075
>>NP_009207 (OMIM: 604477) chromobox protein homolog 3 [ (183 aa)
initn: 1221 init1: 1221 opt: 1221 Z-score: 1265.4 bits: 240.7 E(85289): 9.6e-64
Smith-Waterman score: 1221; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)
10 20 30 40 50 60
pF1KB5 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 WEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED
130 140 150 160 170 180
pF1KB5 EAQ
:::
NP_009 EAQ
>>XP_005249668 (OMIM: 604477) PREDICTED: chromobox prote (183 aa)
initn: 1221 init1: 1221 opt: 1221 Z-score: 1265.4 bits: 240.7 E(85289): 9.6e-64
Smith-Waterman score: 1221; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)
10 20 30 40 50 60
pF1KB5 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED
130 140 150 160 170 180
pF1KB5 EAQ
:::
XP_005 EAQ
>>NP_057671 (OMIM: 604477) chromobox protein homolog 3 [ (183 aa)
initn: 1221 init1: 1221 opt: 1221 Z-score: 1265.4 bits: 240.7 E(85289): 9.6e-64
Smith-Waterman score: 1221; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)
10 20 30 40 50 60
pF1KB5 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 WEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED
130 140 150 160 170 180
pF1KB5 EAQ
:::
NP_057 EAQ
>>NP_006798 (OMIM: 604511) chromobox protein homolog 1 [ (185 aa)
initn: 877 init1: 449 opt: 848 Z-score: 883.6 bits: 170.1 E(85289): 1.8e-42
Smith-Waterman score: 848; 73.6% identity (88.2% similar) in 178 aa overlap (11-181:1-178)
10 20 30 40 50
pF1KB5 MASNKTTLQKMGKKQNGKS-KKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN
:::::: :. ..: : : ::.:::::::::::.:::::.::::::.: ::
NP_006 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDN
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 TWEPEENLDCPELIEAFLNSQKAGKEKD---GTKRKSLSDSES--DDSKSKKKRDAADKP
:::::::::::.:: ::.:::...: : : :::. ::::. ..:: :::.. ..::
NP_006 TWEPEENLDCPDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 RGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTW
:::::::.:::::::::::::::::::::.::::::: :::::.::::.::.::::::::
NP_006 RGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTW
120 130 140 150 160 170
180
pF1KB5 HSCP-EDEAQ
:: : ::.
NP_006 HSYPSEDDDKKDDKN
180
>>NP_001120700 (OMIM: 604511) chromobox protein homolog (185 aa)
initn: 877 init1: 449 opt: 848 Z-score: 883.6 bits: 170.1 E(85289): 1.8e-42
Smith-Waterman score: 848; 73.6% identity (88.2% similar) in 178 aa overlap (11-181:1-178)
10 20 30 40 50
pF1KB5 MASNKTTLQKMGKKQNGKS-KKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN
:::::: :. ..: : : ::.:::::::::::.:::::.::::::.: ::
NP_001 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDN
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 TWEPEENLDCPELIEAFLNSQKAGKEKD---GTKRKSLSDSES--DDSKSKKKRDAADKP
:::::::::::.:: ::.:::...: : : :::. ::::. ..:: :::.. ..::
NP_001 TWEPEENLDCPDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 RGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTW
:::::::.:::::::::::::::::::::.::::::: :::::.::::.::.::::::::
NP_001 RGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTW
120 130 140 150 160 170
180
pF1KB5 HSCP-EDEAQ
:: : ::.
NP_001 HSYPSEDDDKKDDKN
180
>>NP_001120793 (OMIM: 604478) chromobox protein homolog (191 aa)
initn: 449 init1: 449 opt: 470 Z-score: 496.5 bits: 98.6 E(85289): 6.4e-21
Smith-Waterman score: 746; 63.9% identity (80.0% similar) in 180 aa overlap (11-180:1-180)
10 20 30 40 50 60
pF1KB5 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT
:::: . . . . ::.:::::::::::.:.:::.::::::.. ::
NP_001 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNT
10 20 30 40 50
70 80 90 100 110
pF1KB5 WEPEENLDCPELIEAFLNSQKAGKE---------KDGTKRKSLSDSESDDSKSKKKRDAA
::::.:::::::: :... : :: ....:::: .. .:: ::::::. .
NP_001 WEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 -DKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEE
: ::: :::.::.::::::: :.:::::::::.::::::::::::.::::::::::::
NP_001 NDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEE
120 130 140 150 160 170
180
pF1KB5 RLTWHSCPEDEAQ
:::::. :::
NP_001 RLTWHAYPEDAENKEKETAKS
180 190
>>NP_036249 (OMIM: 604478) chromobox protein homolog 5 [ (191 aa)
initn: 449 init1: 449 opt: 470 Z-score: 496.5 bits: 98.6 E(85289): 6.4e-21
Smith-Waterman score: 746; 63.9% identity (80.0% similar) in 180 aa overlap (11-180:1-180)
10 20 30 40 50 60
pF1KB5 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT
:::: . . . . ::.:::::::::::.:.:::.::::::.. ::
NP_036 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNT
10 20 30 40 50
70 80 90 100 110
pF1KB5 WEPEENLDCPELIEAFLNSQKAGKE---------KDGTKRKSLSDSESDDSKSKKKRDAA
::::.:::::::: :... : :: ....:::: .. .:: ::::::. .
NP_036 WEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 -DKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEE
: ::: :::.::.::::::: :.:::::::::.::::::::::::.::::::::::::
NP_036 NDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEE
120 130 140 150 160 170
180
pF1KB5 RLTWHSCPEDEAQ
:::::. :::
NP_036 RLTWHAYPEDAENKEKETAKS
180 190
>>NP_001120794 (OMIM: 604478) chromobox protein homolog (191 aa)
initn: 449 init1: 449 opt: 470 Z-score: 496.5 bits: 98.6 E(85289): 6.4e-21
Smith-Waterman score: 746; 63.9% identity (80.0% similar) in 180 aa overlap (11-180:1-180)
10 20 30 40 50 60
pF1KB5 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT
:::: . . . . ::.:::::::::::.:.:::.::::::.. ::
NP_001 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNT
10 20 30 40 50
70 80 90 100 110
pF1KB5 WEPEENLDCPELIEAFLNSQKAGKE---------KDGTKRKSLSDSESDDSKSKKKRDAA
::::.:::::::: :... : :: ....:::: .. .:: ::::::. .
NP_001 WEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 -DKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEE
: ::: :::.::.::::::: :.:::::::::.::::::::::::.::::::::::::
NP_001 NDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEE
120 130 140 150 160 170
180
pF1KB5 RLTWHSCPEDEAQ
:::::. :::
NP_001 RLTWHAYPEDAENKEKETAKS
180 190
>>XP_011513299 (OMIM: 603778) PREDICTED: chromodomain Y- (522 aa)
initn: 150 init1: 124 opt: 202 Z-score: 216.1 bits: 48.1 E(85289): 2.7e-05
Smith-Waterman score: 202; 34.0% identity (70.8% similar) in 106 aa overlap (25-124:2-106)
10 20 30 40 50
pF1KB5 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVN-GKVEYFLKWKGFTDADN
: : . ::...:.: . ::.::...:::. . :.
XP_011 MASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDD
10 20 30
60 70 80 90 100 110
pF1KB5 TWEPEENL-DCPELIEAFLNSQKAGKEKDGT----KRKSLSDSESDDSKSKKKRDAADKP
:::::..: .: : :. : : ... :.:..: .: : ...... :.: .. . .:
XP_011 TWEPEQHLVNCEEYIHDF-NRRHTEKQKESTLTRTNRTSPNNARKQISRSTNSNFSKTSP
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB5 RGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTW
.... : : :
XP_011 KALVIGKDHESKNSQLFAASQKFRKNTAPSLSSRKNMDLAKSGIKILVPKSPVKSRTAVD
100 110 120 130 140 150
>>NP_004815 (OMIM: 603778) chromodomain Y-like protein i (544 aa)
initn: 150 init1: 124 opt: 202 Z-score: 215.8 bits: 48.1 E(85289): 2.8e-05
Smith-Waterman score: 202; 34.0% identity (70.8% similar) in 106 aa overlap (25-124:2-106)
10 20 30 40 50
pF1KB5 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVN-GKVEYFLKWKGFTDADN
: : . ::...:.: . ::.::...:::. . :.
NP_004 MASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDD
10 20 30
60 70 80 90 100 110
pF1KB5 TWEPEENL-DCPELIEAFLNSQKAGKEKDGT----KRKSLSDSESDDSKSKKKRDAADKP
:::::..: .: : :. : : ... :.:..: .: : ...... :.: .. . .:
NP_004 TWEPEQHLVNCEEYIHDF-NRRHTEKQKESTLTRTNRTSPNNARKQISRSTNSNFSKTSP
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB5 RGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTW
.... : : :
NP_004 KALVIGKDHESKNSQLFAASQKFRKNTAPSLSSRKNMDLAKSGIKILVPKSPVKSRTAVD
100 110 120 130 140 150
183 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:40:33 2016 done: Fri Nov 4 03:40:34 2016
Total Scan time: 5.950 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]