FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5363, 154 aa
  1>>>pF1KB5363 154 - 154 aa - 154 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5523+/-0.00066; mu= 8.6273+/- 0.040
 mean_var=123.4694+/-25.283, 0's: 0 Z-trim(116.1): 58  B-trim: 687 in 1/50
 Lambda= 0.115424
 statistics sampled from 16587 (16655) to 16587 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.512), width:  16
 Scan time:  1.990

The best scores are:                                      opt bits E(32554)
CCDS556.1 RNF11 gene_id:26994|Hs108|chr1           ( 154) 1097 192.1 1.2e-49


>>CCDS556.1 RNF11 gene_id:26994|Hs108|chr1                (154 aa)
 initn: 1097 init1: 1097 opt: 1097  Z-score: 1005.0  bits: 192.1 E(32554): 1.2e-49
Smith-Waterman score: 1097; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)

               10        20        30        40        50        60
pF1KB5 MGNCLKSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQVPVPVYHPTPSQTRLAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MGNCLKSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQVPVPVYHPTPSQTRLAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QLTEEEQIRIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QLTEEEQIRIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHI
               70        80        90       100       110       120

              130       140       150    
pF1KB5 YHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN
       ::::::::::::::::::::::::::::::::::
CCDS55 YHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN
              130       140       150    




154 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 17:15:02 2016 done: Thu Nov  3 17:15:02 2016
 Total Scan time:  1.990 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]