FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5366, 211 aa
  1>>>pF1KB5366 211 - 211 aa - 211 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2619+/-0.000309; mu= 15.8219+/- 0.019
 mean_var=87.8537+/-17.312, 0's: 0 Z-trim(117.5): 6  B-trim: 0 in 0/56
 Lambda= 0.136834
 statistics sampled from 29521 (29525) to 29521 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.346), width:  16
 Scan time:  6.530

The best scores are:                                      opt bits E(85289)
NP_150254 (OMIM: 113703) 60S ribosomal protein L13 ( 211) 1378 281.2 8.8e-76
NP_000968 (OMIM: 113703) 60S ribosomal protein L13 ( 211) 1378 281.2 8.8e-76
NP_001230059 (OMIM: 113703) 60S ribosomal protein  ( 192)  769 160.9 1.3e-39
NP_001230060 (OMIM: 113703) 60S ribosomal protein  ( 164)  621 131.6 7.1e-31


>>NP_150254 (OMIM: 113703) 60S ribosomal protein L13 iso  (211 aa)
 initn: 1378 init1: 1378 opt: 1378  Z-score: 1481.5  bits: 281.2 E(85289): 8.8e-76
Smith-Waterman score: 1378; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KB5 MAPSRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_150 MAPSRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 CPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_150 CPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_150 RSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFA
              130       140       150       160       170       180

              190       200       210 
pF1KB5 SLRMARANARLFGIRAKRAKEAAEQDVEKKK
       :::::::::::::::::::::::::::::::
NP_150 SLRMARANARLFGIRAKRAKEAAEQDVEKKK
              190       200       210 

>>NP_000968 (OMIM: 113703) 60S ribosomal protein L13 iso  (211 aa)
 initn: 1378 init1: 1378 opt: 1378  Z-score: 1481.5  bits: 281.2 E(85289): 8.8e-76
Smith-Waterman score: 1378; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KB5 MAPSRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAPSRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 CPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 CPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFA
              130       140       150       160       170       180

              190       200       210 
pF1KB5 SLRMARANARLFGIRAKRAKEAAEQDVEKKK
       :::::::::::::::::::::::::::::::
NP_000 SLRMARANARLFGIRAKRAKEAAEQDVEKKK
              190       200       210 

>>NP_001230059 (OMIM: 113703) 60S ribosomal protein L13   (192 aa)
 initn: 769 init1: 769 opt: 769  Z-score: 832.3  bits: 160.9 E(85289): 1.3e-39
Smith-Waterman score: 1209; 91.0% identity (91.0% similar) in 211 aa overlap (1-211:1-192)

               10        20        30        40        50        60
pF1KB5 MAPSRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPSRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 CPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEY
       :::::::::                   ::::::::::::::::::::::::::::::::
NP_001 CPTVRYHTK-------------------KVARTIGISVDPRRRNKSTESLQANVQRLKEY
                                  70        80        90       100 

              130       140       150       160       170       180
pF1KB5 RSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFA
             110       120       130       140       150       160 

              190       200       210 
pF1KB5 SLRMARANARLFGIRAKRAKEAAEQDVEKKK
       :::::::::::::::::::::::::::::::
NP_001 SLRMARANARLFGIRAKRAKEAAEQDVEKKK
             170       180       190  

>>NP_001230060 (OMIM: 113703) 60S ribosomal protein L13   (164 aa)
 initn: 621 init1: 621 opt: 621  Z-score: 675.3  bits: 131.6 E(85289): 7.1e-31
Smith-Waterman score: 977; 77.7% identity (77.7% similar) in 211 aa overlap (1-211:1-164)

               10        20        30        40        50        60
pF1KB5 MAPSRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPSRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 CPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEY
       :::::::::::::::::::::::::::::                               
NP_001 CPTVRYHTKVRAGRGFSLEELRVAGIHKK-------------------------------
               70        80                                        

              130       140       150       160       170       180
pF1KB5 RSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFA
                       ::::::::::::::::::::::::::::::::::::::::::::
NP_001 ----------------GDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFA
                      90       100       110       120       130   

              190       200       210 
pF1KB5 SLRMARANARLFGIRAKRAKEAAEQDVEKKK
       :::::::::::::::::::::::::::::::
NP_001 SLRMARANARLFGIRAKRAKEAAEQDVEKKK
           140       150       160    




211 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:31:45 2016 done: Sat Nov  5 12:31:46 2016
 Total Scan time:  6.530 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]