Result of FASTA (omim) for
pF1KB5389
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5389, 479 aa
1>>>pF1KB5389 479 - 479 aa - 479 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0003+/-0.000417; mu= 14.5898+/- 0.026
mean_var=78.8088+/-15.189, 0's: 0 Z-trim(112.0): 142 B-trim: 263 in 1/49
Lambda= 0.144473
statistics sampled from 20578 (20766) to 20578 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.614), E-opt: 0.2 (0.243), width: 16
Scan time: 8.910
The best scores are: opt bits E(85289)
NP_009173 (OMIM: 605812) ATP-dependent RNA helicas ( 479) 3108 657.7 2e-188
XP_011521134 (OMIM: 605812) PREDICTED: ATP-depende ( 539) 3108 657.7 2.2e-188
XP_011521136 (OMIM: 605812) PREDICTED: ATP-depende ( 484) 2990 633.1 5.1e-181
XP_006721190 (OMIM: 605812) PREDICTED: ATP-depende ( 370) 2430 516.4 5.5e-146
NP_001244103 (OMIM: 605812) ATP-dependent RNA heli ( 370) 2430 516.4 5.5e-146
XP_016878379 (OMIM: 605812) PREDICTED: ATP-depende ( 370) 2430 516.4 5.5e-146
NP_001014449 (OMIM: 605812) ATP-dependent RNA heli ( 370) 2430 516.4 5.5e-146
NP_001244102 (OMIM: 605812) ATP-dependent RNA heli ( 370) 2430 516.4 5.5e-146
NP_001014451 (OMIM: 605812) ATP-dependent RNA heli ( 448) 2289 487.0 4.6e-137
NP_001244101 (OMIM: 605812) ATP-dependent RNA heli ( 453) 2289 487.0 4.6e-137
XP_011521135 (OMIM: 605812) PREDICTED: ATP-depende ( 508) 2289 487.0 5.1e-137
NP_001244104 (OMIM: 605812) ATP-dependent RNA heli ( 328) 2161 460.3 3.7e-129
NP_037396 (OMIM: 607663) ATP-dependent RNA helicas ( 483) 2074 442.2 1.5e-123
XP_011541093 (OMIM: 607663) PREDICTED: ATP-depende ( 482) 2067 440.7 4.1e-123
XP_011541092 (OMIM: 607663) PREDICTED: ATP-depende ( 486) 2067 440.7 4.2e-123
NP_001317367 (OMIM: 607663) ATP-dependent RNA heli ( 369) 1797 384.4 2.9e-106
NP_001958 (OMIM: 601102) eukaryotic initiation fac ( 407) 923 202.3 2.1e-51
NP_001407 (OMIM: 602641) eukaryotic initiation fac ( 406) 915 200.6 6.8e-51
NP_055555 (OMIM: 268305,608546) eukaryotic initiat ( 411) 865 190.2 9.4e-48
NP_004631 (OMIM: 142560) spliceosome RNA helicase ( 428) 724 160.8 6.9e-39
NP_542165 (OMIM: 142560) spliceosome RNA helicase ( 428) 724 160.8 6.9e-39
NP_004388 (OMIM: 600326) probable ATP-dependent RN ( 483) 719 159.8 1.6e-38
XP_005271474 (OMIM: 600326) PREDICTED: probable AT ( 483) 719 159.8 1.6e-38
NP_001244120 (OMIM: 600326) probable ATP-dependent ( 483) 719 159.8 1.6e-38
NP_001191439 (OMIM: 602641) eukaryotic initiation ( 347) 686 152.8 1.4e-36
NP_009135 (OMIM: 606168) probable ATP-dependent RN ( 824) 679 151.5 8.1e-36
XP_011523824 (OMIM: 268305,608546) PREDICTED: euka ( 390) 656 146.6 1.2e-34
NP_057439 (OMIM: 615428) probable ATP-dependent RN ( 455) 588 132.5 2.5e-30
XP_016879601 (OMIM: 613369) PREDICTED: ATP-depende ( 775) 550 124.6 9.5e-28
NP_031398 (OMIM: 613369) ATP-dependent RNA helicas ( 938) 550 124.7 1.1e-27
XP_016879600 (OMIM: 613369) PREDICTED: ATP-depende ( 938) 550 124.7 1.1e-27
XP_006721720 (OMIM: 613369) PREDICTED: ATP-depende ( 938) 550 124.7 1.1e-27
NP_987095 (OMIM: 613369) ATP-dependent RNA helicas ( 938) 550 124.7 1.1e-27
NP_060365 (OMIM: 616621) probable ATP-dependent RN ( 796) 545 123.6 2e-27
XP_011522561 (OMIM: 613369) PREDICTED: ATP-depende ( 674) 521 118.6 5.6e-26
XP_011540947 (OMIM: 600326) PREDICTED: probable AT ( 434) 514 117.0 1e-25
NP_001278405 (OMIM: 612500) probable ATP-dependent ( 491) 513 116.8 1.3e-25
XP_011522534 (OMIM: 612500) PREDICTED: probable AT ( 581) 513 116.9 1.6e-25
NP_008941 (OMIM: 612500) probable ATP-dependent RN ( 599) 513 116.9 1.6e-25
XP_016857921 (OMIM: 174300,615464) PREDICTED: prob ( 619) 505 115.2 5.2e-25
NP_001026895 (OMIM: 174300,615464) probable ATP-de ( 619) 505 115.2 5.2e-25
XP_016857920 (OMIM: 174300,615464) PREDICTED: prob ( 619) 505 115.2 5.2e-25
XP_011508337 (OMIM: 174300,615464) PREDICTED: prob ( 619) 505 115.2 5.2e-25
XP_016866492 (OMIM: 606286) PREDICTED: probable AT ( 439) 490 112.0 3.4e-24
XP_011534230 (OMIM: 606286) PREDICTED: probable AT ( 529) 490 112.1 4e-24
XP_011534229 (OMIM: 606286) PREDICTED: probable AT ( 529) 490 112.1 4e-24
NP_076977 (OMIM: 611665) ATP-dependent RNA helicas ( 881) 493 112.8 4e-24
NP_001104792 (OMIM: 611665) ATP-dependent RNA heli ( 882) 493 112.8 4e-24
XP_011534228 (OMIM: 606286) PREDICTED: probable AT ( 604) 490 112.1 4.5e-24
NP_061135 (OMIM: 606286) probable ATP-dependent RN ( 648) 490 112.1 4.7e-24
>>NP_009173 (OMIM: 605812) ATP-dependent RNA helicase DD (479 aa)
initn: 3108 init1: 3108 opt: 3108 Z-score: 3503.9 bits: 657.7 E(85289): 2e-188
Smith-Waterman score: 3108; 100.0% identity (100.0% similar) in 479 aa overlap (1-479:1-479)
10 20 30 40 50 60
pF1KB5 MATDSWALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MATDSWALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 NALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 VIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 VIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN
370 380 390 400 410 420
430 440 450 460 470
pF1KB5 ETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 ETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
430 440 450 460 470
>>XP_011521134 (OMIM: 605812) PREDICTED: ATP-dependent R (539 aa)
initn: 3108 init1: 3108 opt: 3108 Z-score: 3503.1 bits: 657.7 E(85289): 2.2e-188
Smith-Waterman score: 3108; 100.0% identity (100.0% similar) in 479 aa overlap (1-479:61-539)
10 20 30
pF1KB5 MATDSWALAVDEQEAAAESLSNLHLKEEKI
::::::::::::::::::::::::::::::
XP_011 AEPAANPRSPRSLVPSLESTSTSVPPAPGTMATDSWALAVDEQEAAAESLSNLHLKEEKI
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB5 KPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYS
100 110 120 130 140 150
100 110 120 130 140 150
pF1KB5 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL
160 170 180 190 200 210
160 170 180 190 200 210
pF1KB5 AMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS
220 230 240 250 260 270
220 230 240 250 260 270
pF1KB5 EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQM
280 290 300 310 320 330
280 290 300 310 320 330
pF1KB5 LLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGA
340 350 360 370 380 390
340 350 360 370 380 390
pF1KB5 ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT
400 410 420 430 440 450
400 410 420 430 440 450
pF1KB5 NVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMN
460 470 480 490 500 510
460 470
pF1KB5 ILNRIQEHFNKKIERLDTDDLDEIEKIAN
:::::::::::::::::::::::::::::
XP_011 ILNRIQEHFNKKIERLDTDDLDEIEKIAN
520 530
>>XP_011521136 (OMIM: 605812) PREDICTED: ATP-dependent R (484 aa)
initn: 2990 init1: 2990 opt: 2990 Z-score: 3370.9 bits: 633.1 E(85289): 5.1e-181
Smith-Waterman score: 2990; 100.0% identity (100.0% similar) in 460 aa overlap (20-479:25-484)
10 20 30 40 50
pF1KB5 MATDSWALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKED
::::::::::::::::::::::::::::::::::::
XP_011 MAGAAGRVQDRALRRFPITLPVGDLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKED
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 RAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB5 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELA
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB5 LQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB5 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB5 KLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB5 EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB5 GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIE
430 440 450 460 470 480
pF1KB5 KIAN
::::
XP_011 KIAN
>>XP_006721190 (OMIM: 605812) PREDICTED: ATP-dependent R (370 aa)
initn: 2430 init1: 2430 opt: 2430 Z-score: 2741.9 bits: 516.4 E(85289): 5.5e-146
Smith-Waterman score: 2430; 100.0% identity (100.0% similar) in 370 aa overlap (110-479:1-370)
80 90 100 110 120 130
pF1KB5 LQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQ
::::::::::::::::::::::::::::::
XP_006 MGFNRPSKIQENALPLMLAEPPQNLIAQSQ
10 20 30
140 150 160 170 180 190
pF1KB5 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB5 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB5 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB5 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
220 230 240 250 260 270
380 390 400 410 420 430
pF1KB5 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
280 290 300 310 320 330
440 450 460 470
pF1KB5 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
::::::::::::::::::::::::::::::::::::::::
XP_006 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
340 350 360 370
>>NP_001244103 (OMIM: 605812) ATP-dependent RNA helicase (370 aa)
initn: 2430 init1: 2430 opt: 2430 Z-score: 2741.9 bits: 516.4 E(85289): 5.5e-146
Smith-Waterman score: 2430; 100.0% identity (100.0% similar) in 370 aa overlap (110-479:1-370)
80 90 100 110 120 130
pF1KB5 LQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQ
::::::::::::::::::::::::::::::
NP_001 MGFNRPSKIQENALPLMLAEPPQNLIAQSQ
10 20 30
140 150 160 170 180 190
pF1KB5 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB5 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB5 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB5 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
220 230 240 250 260 270
380 390 400 410 420 430
pF1KB5 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
280 290 300 310 320 330
440 450 460 470
pF1KB5 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
::::::::::::::::::::::::::::::::::::::::
NP_001 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
340 350 360 370
>>XP_016878379 (OMIM: 605812) PREDICTED: ATP-dependent R (370 aa)
initn: 2430 init1: 2430 opt: 2430 Z-score: 2741.9 bits: 516.4 E(85289): 5.5e-146
Smith-Waterman score: 2430; 100.0% identity (100.0% similar) in 370 aa overlap (110-479:1-370)
80 90 100 110 120 130
pF1KB5 LQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQ
::::::::::::::::::::::::::::::
XP_016 MGFNRPSKIQENALPLMLAEPPQNLIAQSQ
10 20 30
140 150 160 170 180 190
pF1KB5 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB5 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB5 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB5 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
220 230 240 250 260 270
380 390 400 410 420 430
pF1KB5 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
280 290 300 310 320 330
440 450 460 470
pF1KB5 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
::::::::::::::::::::::::::::::::::::::::
XP_016 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
340 350 360 370
>>NP_001014449 (OMIM: 605812) ATP-dependent RNA helicase (370 aa)
initn: 2430 init1: 2430 opt: 2430 Z-score: 2741.9 bits: 516.4 E(85289): 5.5e-146
Smith-Waterman score: 2430; 100.0% identity (100.0% similar) in 370 aa overlap (110-479:1-370)
80 90 100 110 120 130
pF1KB5 LQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQ
::::::::::::::::::::::::::::::
NP_001 MGFNRPSKIQENALPLMLAEPPQNLIAQSQ
10 20 30
140 150 160 170 180 190
pF1KB5 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB5 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB5 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB5 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
220 230 240 250 260 270
380 390 400 410 420 430
pF1KB5 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
280 290 300 310 320 330
440 450 460 470
pF1KB5 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
::::::::::::::::::::::::::::::::::::::::
NP_001 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
340 350 360 370
>>NP_001244102 (OMIM: 605812) ATP-dependent RNA helicase (370 aa)
initn: 2430 init1: 2430 opt: 2430 Z-score: 2741.9 bits: 516.4 E(85289): 5.5e-146
Smith-Waterman score: 2430; 100.0% identity (100.0% similar) in 370 aa overlap (110-479:1-370)
80 90 100 110 120 130
pF1KB5 LQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQ
::::::::::::::::::::::::::::::
NP_001 MGFNRPSKIQENALPLMLAEPPQNLIAQSQ
10 20 30
140 150 160 170 180 190
pF1KB5 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB5 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB5 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB5 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
220 230 240 250 260 270
380 390 400 410 420 430
pF1KB5 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
280 290 300 310 320 330
440 450 460 470
pF1KB5 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
::::::::::::::::::::::::::::::::::::::::
NP_001 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
340 350 360 370
>>NP_001014451 (OMIM: 605812) ATP-dependent RNA helicase (448 aa)
initn: 2289 init1: 2289 opt: 2289 Z-score: 2581.8 bits: 487.0 E(85289): 4.6e-137
Smith-Waterman score: 2829; 93.5% identity (93.5% similar) in 479 aa overlap (1-479:1-448)
10 20 30 40 50 60
pF1KB5 MATDSWALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATDSWALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQE
:::::::::::::::::::::::::::::::::::::::
NP_001 LLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRL---------------------
70 80 90
130 140 150 160 170 180
pF1KB5 NALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGK
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ----------PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGK
100 110 120 130 140
190 200 210 220 230 240
pF1KB5 VIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB5 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB5 EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQV
270 280 290 300 310 320
370 380 390 400 410 420
pF1KB5 ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN
330 340 350 360 370 380
430 440 450 460 470
pF1KB5 ETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
390 400 410 420 430 440
>>NP_001244101 (OMIM: 605812) ATP-dependent RNA helicase (453 aa)
initn: 2289 init1: 2289 opt: 2289 Z-score: 2581.7 bits: 487.0 E(85289): 4.6e-137
Smith-Waterman score: 2711; 93.3% identity (93.3% similar) in 460 aa overlap (20-479:25-453)
10 20 30 40 50
pF1KB5 MATDSWALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKED
::::::::::::::::::::::::::::::::::::
NP_001 MAGAAGRVQDRALRRFPITLPVGDLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKED
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 RAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRP
::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRL----------------
70 80 90 100
120 130 140 150 160 170
pF1KB5 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELA
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 ---------------PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELA
110 120 130 140
180 190 200 210 220 230
pF1KB5 LQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKK
150 160 170 180 190 200
240 250 260 270 280 290
pF1KB5 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI
210 220 230 240 250 260
300 310 320 330 340 350
pF1KB5 KLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK
270 280 290 300 310 320
360 370 380 390 400 410
pF1KB5 EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD
330 340 350 360 370 380
420 430 440 450 460 470
pF1KB5 GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIE
390 400 410 420 430 440
pF1KB5 KIAN
::::
NP_001 KIAN
450
479 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:43:57 2016 done: Fri Nov 4 21:43:58 2016
Total Scan time: 8.910 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]