Result of FASTA (ccds) for pF1KB5400
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5400, 471 aa
  1>>>pF1KB5400 471 - 471 aa - 471 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.3535+/-0.000965; mu= 4.8904+/- 0.059
 mean_var=374.7849+/-76.883, 0's: 0 Z-trim(116.0): 26  B-trim: 20 in 1/54
 Lambda= 0.066250
 statistics sampled from 16602 (16626) to 16602 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.511), width:  16
 Scan time:  3.620

The best scores are:                                      opt bits E(32554)
CCDS14410.1 NONO gene_id:4841|Hs108|chrX           ( 471) 3200 319.4   5e-87
CCDS55445.1 NONO gene_id:4841|Hs108|chrX           ( 382) 2567 258.8 7.1e-69
CCDS41870.1 PSPC1 gene_id:55269|Hs108|chr13        ( 523) 1773 183.1 6.1e-46
CCDS388.1 SFPQ gene_id:6421|Hs108|chr1             ( 707) 1716 177.8 3.2e-44


>>CCDS14410.1 NONO gene_id:4841|Hs108|chrX                (471 aa)
 initn: 3200 init1: 3200 opt: 3200  Z-score: 1675.9  bits: 319.4 E(32554): 5e-87
Smith-Waterman score: 3200; 100.0% identity (100.0% similar) in 471 aa overlap (1-471:1-471)

               10        20        30        40        50        60
pF1KB5 MQSNKTFNLEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIPANGQQASSQNEGLTIDLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MQSNKTFNLEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIPANGQQASSQNEGLTIDLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 NFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 VDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 VIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 EAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRRREEEMRRQQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRRREEEMRRQQE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EMMRRQQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EMMRRQQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATMM
              370       380       390       400       410       420

              430       440       450       460       470 
pF1KB5 PDGTLGLTPPTTERFGQAATMEGIGAIGGTPPAFNRAAPGAEFAPNKRRRY
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PDGTLGLTPPTTERFGQAATMEGIGAIGGTPPAFNRAAPGAEFAPNKRRRY
              430       440       450       460       470 

>>CCDS55445.1 NONO gene_id:4841|Hs108|chrX                (382 aa)
 initn: 2567 init1: 2567 opt: 2567  Z-score: 1350.0  bits: 258.8 E(32554): 7.1e-69
Smith-Waterman score: 2567; 100.0% identity (100.0% similar) in 382 aa overlap (90-471:1-382)

      60        70        80        90       100       110         
pF1KB5 KNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETR
                                     ::::::::::::::::::::::::::::::
CCDS55                               MRKLFEKYGKAGEVFIHKDKGFGFIRLETR
                                             10        20        30

     120       130       140       150       160       170         
pF1KB5 TLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVV
               40        50        60        70        80        90

     180       190       200       210       220       230         
pF1KB5 IVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEK
              100       110       120       130       140       150

     240       250       260       270       280       290         
pF1KB5 LVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEME
              160       170       180       190       200       210

     300       310       320       330       340       350         
pF1KB5 MEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRRREEEMRRQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRRREEEMRRQQ
              220       230       240       250       260       270

     360       370       380       390       400       410         
pF1KB5 EEMMRRQQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EEMMRRQQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATM
              280       290       300       310       320       330

     420       430       440       450       460       470 
pF1KB5 MPDGTLGLTPPTTERFGQAATMEGIGAIGGTPPAFNRAAPGAEFAPNKRRRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MPDGTLGLTPPTTERFGQAATMEGIGAIGGTPPAFNRAAPGAEFAPNKRRRY
              340       350       360       370       380  

>>CCDS41870.1 PSPC1 gene_id:55269|Hs108|chr13             (523 aa)
 initn: 1767 init1: 1594 opt: 1773  Z-score: 938.3  bits: 183.1 E(32554): 6.1e-46
Smith-Waterman score: 1780; 60.0% identity (79.1% similar) in 468 aa overlap (37-460:45-511)

         10        20        30        40        50        60      
pF1KB5 FNLEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIPANGQQASSQNEGLTIDLKNFRKPG
                                     : :: ::  ..  ... :.:::.:.: :::
CCDS41 NPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTIDIKSFLKPG
           20        30        40        50        60        70    

         70        80        90       100       110       120      
pF1KB5 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAK
       :::.::: :::::::: :::::....:::.::. .::::..:.::::::::.::::::::
CCDS41 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAK
           80        90       100       110       120       130    

        130       140       150       160       170       180      
pF1KB5 VELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGR
       .:::.  :... ::.::: :.:.:::.::   :::::::.::: :: ::.:::.::::::
CCDS41 AELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGR
          140       150       160       170       180       190    

        190       200       210       220       230       240      
pF1KB5 PSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQQ
        .:::.:::..:: :::::.::..:.::::: :::: ::::.:.:::.::::::. :.::
CCDS41 ATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQ
          200       210       220       230       240       250    

        250       260       270       280       290       300      
pF1KB5 FHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEMEAARHE
       .::::::::::::::.::.::: ::::: ::::::..::::::.::.:::: ::::::::
CCDS41 YHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHE
          260       270       280       290       300       310    

        310       320       330       340       350        360     
pF1KB5 HQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRRREEEM-RRQQEEMMRR
       ::.::::::::::::::::.:::.:::.:::::..::.:::.::::::: :....: .::
CCDS41 HQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRHREQEELRR
          320       330       340       350       360       370    

         370       380             390                       400   
pF1KB5 QQEGFKGTFPDAREQEIRMGQMA------MGGA----------------MGINNRGAMPP
       :::::: .. . ::::.:::.:.      :: :                :..:::...: 
CCDS41 QQEGFKPNYMENREQEMRMGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNMNNRATIPG
          380       390       400       410       420       430    

           410             420             430                440  
pF1KB5 APVPAGTPA--PPGPATM----MPDG------TLGLTPPTT------ERFGQA---ATME
        :.  : ::  : : :.:    :::.       .   ::.        : :.    : : 
CCDS41 PPMGPG-PAMGPEGAANMGTPMMPDNGAVHNDRFPQGPPSQMGSPMGSRTGSETPQAPMS
          440        450       460       470       480       490   

            450       460       470  
pF1KB5 GIGAIGGTPPAFNRAAPGAEFAPNKRRRY 
       :.: ..: : .:.:.. :            
CCDS41 GVGPVSGGPGGFGRGSQGGNFEGPNKRRRY
           500       510       520   

>>CCDS388.1 SFPQ gene_id:6421|Hs108|chr1                  (707 aa)
 initn: 1765 init1: 1622 opt: 1716  Z-score: 907.4  bits: 177.8 E(32554): 3.2e-44
Smith-Waterman score: 1778; 60.0% identity (79.9% similar) in 473 aa overlap (16-471:241-707)

                              10        20        30        40     
pF1KB5                MQSNKTFNLEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIPANG
                                     ::  .:::    .:::..: :::    . .
CCDS38 KMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQHH--PPYHQQHHQGPPPGGPGGRS
              220       230       240         250       260        

          50        60        70        80        90       100     
pF1KB5 QQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI
       ..  :..::.  .:. .:.:::::.::: :::::::: ::::.:...:: :::. :::::
CCDS38 EEKISDSEGFKANLSLLRRPGEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFI
      270       280       290       300       310       320        

         110       120       130       140       150       160     
pF1KB5 HKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLE
       .: ::::::.::.:.::::::.:::. :.::.::::::: :.:.:.::::  ::::::::
CCDS38 NKGKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLE
      330       340       350       360       370       380        

         170       180       190       200       210       220     
pF1KB5 EAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVE
       :::: :: .:::::::::::: .:::::::..:::::::..::::: ::::: :::: ::
CCDS38 EAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVE
      390       400       410       420       430       440        

         230       240       250       260       270       280     
pF1KB5 PMDQLDDEEGLPEKLVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV
       :..:::::.::::::. :: ...:::: :::::: :.:::::..:::.: ::::::..::
CCDS38 PLEQLDDEDGLPEKLAQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQV
      450       460       470       480       490       500        

         290       300       310       320       330       340     
pF1KB5 DRNIKEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQE
       ..:.:.:..::: ::: : ::::. :.:::::::::::::::::::::.::::...::::
CCDS38 EKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQE
      510       520       530       540       550       560        

         350          360        370        380          390       
pF1KB5 EERRRREEEM---RRQQEEMMRRQ-QEGF-KGTFPDAREQEIRMG---QMAMGGAMGINN
       ::::::::::   .:..::.:::: .:.. .  . : ::...:::    : ::  .: ..
CCDS38 EERRRREEEMMIRQREMEEQMRRQREESYSRMGYMDPRERDMRMGGGGAMNMGDPYGSGG
      570       580       590       600       610       620        

       400       410           420       430         440           
pF1KB5 RGAMPPAPVPAGT--PAPPG--PATMMPDGTLGLTPPTTERFGQ--AATMEGIGAIG---
       .  .::    .:    : ::  ::::  .:..  .   ::::::  :. . : :  :   
CCDS38 Q-KFPPLGGGGGIGYEANPGVPPATM--SGSMMGSDMRTERFGQGGAGPVGGQGPRGMGP
       630       640       650         660       670       680     

      450       460       470 
pF1KB5 GTPPAFNRAAPGAEFAPNKRRRY
       ::: ...:.    : .:::. :.
CCDS38 GTPAGYGRGREEYE-GPNKKPRF
         690        700       




471 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:42:57 2016 done: Fri Nov  4 03:42:58 2016
 Total Scan time:  3.620 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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