FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5437, 333 aa
  1>>>pF1KB5437 333 - 333 aa - 333 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5855+/-0.000903; mu= 15.4074+/- 0.055
 mean_var=80.9522+/-16.124, 0's: 0 Z-trim(106.1): 44  B-trim: 10 in 1/49
 Lambda= 0.142548
 statistics sampled from 8766 (8802) to 8766 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.27), width:  16
 Scan time:  2.680

The best scores are:                                      opt bits E(32554)
CCDS9436.1 SUGT1 gene_id:10910|Hs108|chr13         ( 333) 2199 461.9 3.3e-130
CCDS45050.1 SUGT1 gene_id:10910|Hs108|chr13        ( 365) 1521 322.5 3.4e-88


>>CCDS9436.1 SUGT1 gene_id:10910|Hs108|chr13              (333 aa)
 initn: 2199 init1: 2199 opt: 2199  Z-score: 2451.1  bits: 461.9 E(32554): 3.3e-130
Smith-Waterman score: 2199; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)

               10        20        30        40        50        60
pF1KB5 MAAAAAGTATSQRFFQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MAAAAAGTATSQRFFQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 YCVAVADAKKSLELNPNNSTAMLRKGICEYHEKNYAAALETFTEGQKLDSADANFSVWIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 YCVAVADAKKSLELNPNNSTAMLRKGICEYHEKNYAAALETFTEGQKLDSADANFSVWIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RCQEAQNGSESEVWTHQSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 RCQEAQNGSESEVWTHQSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLEGQGDVPTPKQFVAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 PSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLEGQGDVPTPKQFVAD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 VKNLYPSSSPYTRNWDKLVGEIKEEEKNEKLEGDAALNRLFQQIYSDGSDEVKRAMNKSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 VKNLYPSSSPYTRNWDKLVGEIKEEEKNEKLEGDAALNRLFQQIYSDGSDEVKRAMNKSF
              250       260       270       280       290       300

              310       320       330   
pF1KB5 MESGGTVLSTNWSDVGKRKVEINPPDDMEWKKY
       :::::::::::::::::::::::::::::::::
CCDS94 MESGGTVLSTNWSDVGKRKVEINPPDDMEWKKY
              310       320       330   

>>CCDS45050.1 SUGT1 gene_id:10910|Hs108|chr13             (365 aa)
 initn: 1481 init1: 1481 opt: 1521  Z-score: 1696.9  bits: 322.5 E(32554): 3.4e-88
Smith-Waterman score: 2120; 91.0% identity (91.2% similar) in 365 aa overlap (1-333:1-365)

               10        20        30        40        50        60
pF1KB5 MAAAAAGTATSQRFFQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAAAAAGTATSQRFFQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGN
               10        20        30        40        50        60

               70        80        90       100                    
pF1KB5 YCVAVADAKKSLELNPNNSTAMLRKGICEYHEKNYAAALETFTEGQKLD-----------
       :::::::::::::::::::::::::::::::::::::::::::::::::           
CCDS45 YCVAVADAKKSLELNPNNSTAMLRKGICEYHEKNYAAALETFTEGQKLDIETGFHRVGQA
               70        80        90       100       110       120

                          110       120       130       140        
pF1KB5 ---------------------SADANFSVWIKRCQEAQNGSESEVWTHQSKIKYDWYQTE
                            .::::::::::::::::::::::::::::::::::::::
CCDS45 GLQLLTSSDPPALDSQSAGITGADANFSVWIKRCQEAQNGSESEVWTHQSKIKYDWYQTE
              130       140       150       160       170       180

      150       160       170       180       190       200        
pF1KB5 SQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLST
              190       200       210       220       230       240

      210       220       230       240       250       260        
pF1KB5 KIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADVKNLYPSSSPYTRNWDKLVGEIKEEEKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADVKNLYPSSSPYTRNWDKLVGEIKEEEKN
              250       260       270       280       290       300

      270       280       290       300       310       320        
pF1KB5 EKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDM
              310       320       330       340       350       360

      330   
pF1KB5 EWKKY
       :::::
CCDS45 EWKKY
            




333 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:47:31 2016 done: Sat Nov  5 12:47:32 2016
 Total Scan time:  2.680 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]