Result of FASTA (ccds) for
pF1KB5454
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5454, 514 aa
1>>>pF1KB5454 514 - 514 aa - 514 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6093+/-0.000938; mu= 17.2136+/- 0.057
mean_var=72.0203+/-14.564, 0's: 0 Z-trim(105.3): 24 B-trim: 262 in 1/49
Lambda= 0.151129
statistics sampled from 8353 (8365) to 8353 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.257), width: 16
Scan time: 3.100
The best scores are: opt bits E(32554)
CCDS795.1 SARS gene_id:6301|Hs108|chr1 ( 514) 3406 752.0 3.5e-217
CCDS81356.1 SARS gene_id:6301|Hs108|chr1 ( 536) 2787 617.1 1.6e-176
CCDS33017.1 SARS2 gene_id:54938|Hs108|chr19 ( 518) 590 138.1 2.4e-32
CCDS54265.1 SARS2 gene_id:54938|Hs108|chr19 ( 520) 590 138.1 2.4e-32
>>CCDS795.1 SARS gene_id:6301|Hs108|chr1 (514 aa)
initn: 3406 init1: 3406 opt: 3406 Z-score: 4012.5 bits: 752.0 E(32554): 3.5e-217
Smith-Waterman score: 3406; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)
10 20 30 40 50 60
pF1KB5 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 EFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKPAPIEQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 EFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKPAPIEQEP
430 440 450 460 470 480
490 500 510
pF1KB5 SKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDA
::::::::::::::::::::::::::::::::::
CCDS79 SKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDA
490 500 510
>>CCDS81356.1 SARS gene_id:6301|Hs108|chr1 (536 aa)
initn: 2787 init1: 2787 opt: 2787 Z-score: 3282.8 bits: 617.1 E(32554): 1.6e-176
Smith-Waterman score: 3352; 95.9% identity (95.9% similar) in 536 aa overlap (1-514:1-536)
10 20 30 40 50 60
pF1KB5 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYH
310 320 330 340 350 360
370 380 390 400 410
pF1KB5 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDK-
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKR
370 380 390 400 410 420
420 430 440 450
pF1KB5 ---------------------VEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKE
:::::::::::::::::::::::::::::::::::::::
CCDS81 KNNLHLSTQNKLEASLFSPKKVEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKE
430 440 450 460 470 480
460 470 480 490 500 510
pF1KB5 FMPPGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FMPPGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDA
490 500 510 520 530
>>CCDS33017.1 SARS2 gene_id:54938|Hs108|chr19 (518 aa)
initn: 433 init1: 287 opt: 590 Z-score: 694.2 bits: 138.1 E(32554): 2.4e-32
Smith-Waterman score: 596; 30.1% identity (66.4% similar) in 342 aa overlap (123-460:158-485)
100 110 120 130 140 150
pF1KB5 DALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVD
.:: . . . .. : ::.::.. ::. .
CCDS33 EVQQDPKYQGLRARGREIRKELVHLYPREAQLEEQFYLQALKLPNQTHPDVPVG-DES-Q
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB5 NKVERIWGDCTVR--KKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQY
.: .. :: : . .:... .: .. .. . :.: :.:.:.:. ..:...:...
CCDS33 ARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNF
190 200 210 220 230 240
220 230 240 250 260
pF1KB5 ALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDE-ELYKVIGKGSEKSDDNSYDEKYLI
.. : ::. :. .: ..: :.. .. . . ..:.. : . . :
CCDS33 TFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNI--------DPARFKDLNLA
250 260 270 280 290
270 280 290 300 310 320
pF1KB5 ATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVY
.:.: .:. :. . .:::.... :::.: :... :.. ::..:::.: :.:.:
CCDS33 GTAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNT-GQEPRGLYRVHHFTKVEMFGV
300 310 320 330 340 350
330 340 350 360 370 380
pF1KB5 SSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAF
..: ..: ...::... :. ::. ...... . :. : .:.:.:::.:: : :
CCDS33 TGPGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRF
360 370 380 390 400 410
390 400 410 420 430 440
pF1KB5 RELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKG
:..: :::::.:.:::.: . ::. ...:.: .::: ::. : . :.::. : . :
CCDS33 GEVTSASNCTDFQSRRLHIMF-QTEA--GELQFAHTVNATACAVPRLLIALLESNQQKDG
420 430 440 450 460 470
450 460 470 480 490 500
pF1KB5 -ITVPEKLKEFMPPGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQN
. :: :. ..
CCDS33 SVLVPPALQSYLGTDRITAPTHVPLQYIGPNQPRKPGLPGQPAVS
480 490 500 510
>>CCDS54265.1 SARS2 gene_id:54938|Hs108|chr19 (520 aa)
initn: 433 init1: 287 opt: 590 Z-score: 694.2 bits: 138.1 E(32554): 2.4e-32
Smith-Waterman score: 596; 30.1% identity (66.4% similar) in 342 aa overlap (123-460:160-487)
100 110 120 130 140 150
pF1KB5 DALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVD
.:: . . . .. : ::.::.. ::. .
CCDS54 QQVRLDPGAGSIFGPTFLPFPGQLSLLVEAQLEEQFYLQALKLPNQTHPDVPVG-DES-Q
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB5 NKVERIWGDCTVR--KKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQY
.: .. :: : . .:... .: .. .. . :.: :.:.:.:. ..:...:...
CCDS54 ARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNF
190 200 210 220 230 240
220 230 240 250 260
pF1KB5 ALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDE-ELYKVIGKGSEKSDDNSYDEKYLI
.. : ::. :. .: ..: :.. .. . . ..:.. : . . :
CCDS54 TFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNI--------DPARFKDLNLA
250 260 270 280 290
270 280 290 300 310 320
pF1KB5 ATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVY
.:.: .:. :. . .:::.... :::.: :... :.. ::..:::.: :.:.:
CCDS54 GTAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNT-GQEPRGLYRVHHFTKVEMFGV
300 310 320 330 340 350
330 340 350 360 370 380
pF1KB5 SSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAF
..: ..: ...::... :. ::. ...... . :. : .:.:.:::.:: : :
CCDS54 TGPGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRF
360 370 380 390 400 410
390 400 410 420 430 440
pF1KB5 RELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKG
:..: :::::.:.:::.: . ::. ...:.: .::: ::. : . :.::. : . :
CCDS54 GEVTSASNCTDFQSRRLHIMF-QTEA--GELQFAHTVNATACAVPRLLIALLESNQQKDG
420 430 440 450 460 470
450 460 470 480 490 500
pF1KB5 -ITVPEKLKEFMPPGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQN
. :: :. ..
CCDS54 SVLVPPALQSYLGTDRITAPTHVPLQYIGPNQPRKPGLPGQPAVS
480 490 500 510 520
514 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 12:50:31 2016 done: Sat Nov 5 12:50:31 2016
Total Scan time: 3.100 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]