FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5469, 158 aa
  1>>>pF1KB5469 158 - 158 aa - 158 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2188+/-0.000712; mu= 12.2777+/- 0.043
 mean_var=59.4291+/-12.060, 0's: 0 Z-trim(108.3): 10  B-trim: 564 in 1/50
 Lambda= 0.166370
 statistics sampled from 10091 (10096) to 10091 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.31), width:  16
 Scan time:  1.720

The best scores are:                                      opt bits E(32554)
CCDS1639.1 ACP1 gene_id:52|Hs108|chr2              ( 158) 1078 266.6 4.6e-72
CCDS1640.1 ACP1 gene_id:52|Hs108|chr2              ( 158)  940 233.5 4.3e-62
CCDS46217.1 ACP1 gene_id:52|Hs108|chr2             ( 112)  541 137.6 2.1e-33


>>CCDS1639.1 ACP1 gene_id:52|Hs108|chr2                   (158 aa)
 initn: 1078 init1: 1078 opt: 1078  Z-score: 1407.3  bits: 266.6 E(32554): 4.6e-72
Smith-Waterman score: 1078; 99.4% identity (100.0% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KB5 MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNRVKTCKAKIELLGSY
       :::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS16 QSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSY
               70        80        90       100       110       120

              130       140       150        
pF1KB5 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH
       ::::::::::::::::::::::::::::::::::::::
CCDS16 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH
              130       140       150        

>>CCDS1640.1 ACP1 gene_id:52|Hs108|chr2                   (158 aa)
 initn: 940 init1: 940 opt: 940  Z-score: 1228.3  bits: 233.5 E(32554): 4.3e-62
Smith-Waterman score: 940; 86.7% identity (93.7% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KB5 MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
       :::::::::::::::::::::::::::::::::::::::: .::.:.: ...:  :: :.
CCDS16 MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWVIDSGAVSDWNVGRSPDPRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNRVKTCKAKIELLGSY
        ::.. :::  .: :::::::::::::::::::::::::::::::.::::::::::::::
CCDS16 VSCLRNHGIHTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSY
               70        80        90       100       110       120

              130       140       150        
pF1KB5 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH
       ::::::::::::::::::::::::::::::::::::::
CCDS16 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH
              130       140       150        

>>CCDS46217.1 ACP1 gene_id:52|Hs108|chr2                  (112 aa)
 initn: 549 init1: 535 opt: 541  Z-score: 713.0  bits: 137.6 E(32554): 2.1e-33
Smith-Waterman score: 541; 85.3% identity (91.6% similar) in 95 aa overlap (1-95:1-93)

               10        20        30        40        50        60
pF1KB5 MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNRVKTCKAKIELLGSY
       :::::::::::::::::. . :.     .::.. :                         
CCDS46 QSCMKRHGIPMSHVARQVPSLDLKLC--VLCFSGSLTAVLFLTGTWAGPQTQEL      
               70        80          90       100       110        

              130       140       150        
pF1KB5 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH




158 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:33:52 2016 done: Thu Nov  3 22:33:53 2016
 Total Scan time:  1.720 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]