FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5469, 158 aa
  1>>>pF1KB5469 158 - 158 aa - 158 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2101+/-0.000336; mu= 12.3939+/- 0.021
 mean_var=59.7480+/-12.402, 0's: 0 Z-trim(114.9): 14  B-trim: 1019 in 1/50
 Lambda= 0.165925
 statistics sampled from 25025 (25036) to 25025 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.294), width:  16
 Scan time:  4.460

The best scores are:                                      opt bits E(85289)
NP_004291 (OMIM: 171500) low molecular weight phos ( 158) 1078 266.0 1.8e-71
NP_009030 (OMIM: 171500) low molecular weight phos ( 158)  940 232.9 1.6e-61
NP_001035739 (OMIM: 171500) low molecular weight p ( 112)  541 137.4 6.7e-33


>>NP_004291 (OMIM: 171500) low molecular weight phosphot  (158 aa)
 initn: 1078 init1: 1078 opt: 1078  Z-score: 1404.0  bits: 266.0 E(85289): 1.8e-71
Smith-Waterman score: 1078; 99.4% identity (100.0% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KB5 MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNRVKTCKAKIELLGSY
       :::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
NP_004 QSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSY
               70        80        90       100       110       120

              130       140       150        
pF1KB5 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH
       ::::::::::::::::::::::::::::::::::::::
NP_004 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH
              130       140       150        

>>NP_009030 (OMIM: 171500) low molecular weight phosphot  (158 aa)
 initn: 940 init1: 940 opt: 940  Z-score: 1225.5  bits: 232.9 E(85289): 1.6e-61
Smith-Waterman score: 940; 86.7% identity (93.7% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KB5 MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
       :::::::::::::::::::::::::::::::::::::::: .::.:.: ...:  :: :.
NP_009 MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWVIDSGAVSDWNVGRSPDPRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNRVKTCKAKIELLGSY
        ::.. :::  .: :::::::::::::::::::::::::::::::.::::::::::::::
NP_009 VSCLRNHGIHTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSY
               70        80        90       100       110       120

              130       140       150        
pF1KB5 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH
       ::::::::::::::::::::::::::::::::::::::
NP_009 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH
              130       140       150        

>>NP_001035739 (OMIM: 171500) low molecular weight phosp  (112 aa)
 initn: 549 init1: 535 opt: 541  Z-score: 711.6  bits: 137.4 E(85289): 6.7e-33
Smith-Waterman score: 541; 85.3% identity (91.6% similar) in 95 aa overlap (1-95:1-93)

               10        20        30        40        50        60
pF1KB5 MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNRVKTCKAKIELLGSY
       :::::::::::::::::. . :.     .::.. :                         
NP_001 QSCMKRHGIPMSHVARQVPSLDLKLC--VLCFSGSLTAVLFLTGTWAGPQTQEL      
               70        80          90       100       110        

              130       140       150        
pF1KB5 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH




158 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:33:53 2016 done: Thu Nov  3 22:33:54 2016
 Total Scan time:  4.460 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]