Result of FASTA (ccds) for
pF1KB5476
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5476, 147 aa
1>>>pF1KB5476 147 - 147 aa - 147 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8779+/-0.00055; mu= 14.1092+/- 0.033
mean_var=60.6786+/-12.201, 0's: 0 Z-trim(112.8): 68 B-trim: 88 in 1/50
Lambda= 0.164648
statistics sampled from 13404 (13473) to 13404 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.414), width: 16
Scan time: 1.790
The best scores are: opt bits E(32554)
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 1036 253.5 3.5e-68
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 1024 250.6 2.6e-67
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 1016 248.7 9.5e-67
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 999 244.7 1.6e-65
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 980 240.2 3.6e-64
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 950 233.0 5e-62
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 837 206.1 5e-54
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 827 203.8 2.6e-53
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 692 171.7 1.1e-43
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 664 165.2 1.9e-41
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 659 164.0 4e-41
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 659 164.0 4.1e-41
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 653 162.5 9.2e-41
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 577 144.5 2.7e-35
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 456 115.7 1.1e-26
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 438 111.4 2.1e-25
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 432 110.0 5.6e-25
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 426 108.6 1.9e-24
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 397 101.8 2.2e-22
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 391 100.3 4.9e-22
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 383 98.5 2.3e-21
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 376 96.6 4.7e-21
CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 364 94.0 5.5e-20
CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 122) 354 91.4 1.8e-19
CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 ( 157) 355 91.7 1.8e-19
CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11 ( 153) 351 90.8 3.5e-19
CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 347 89.8 6.9e-19
CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 345 89.4 1.1e-18
CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 ( 140) 326 84.8 2e-17
CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 318 83.0 9.2e-17
CCDS627.1 UBE2U gene_id:148581|Hs108|chr1 ( 226) 311 81.4 3.5e-16
CCDS5814.1 UBE2H gene_id:7328|Hs108|chr7 ( 183) 303 79.4 1.1e-15
CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17 ( 170) 298 78.2 2.3e-15
CCDS13714.1 UBE2G2 gene_id:7327|Hs108|chr21 ( 165) 297 78.0 2.7e-15
CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20 ( 150) 293 77.0 4.8e-15
CCDS2523.1 UBE2F gene_id:140739|Hs108|chr2 ( 185) 272 72.0 1.8e-13
CCDS47874.2 UBE2W gene_id:55284|Hs108|chr8 ( 180) 266 70.6 4.8e-13
CCDS47875.2 UBE2W gene_id:55284|Hs108|chr8 ( 191) 266 70.6 5e-13
CCDS63175.1 UBE2F gene_id:140739|Hs108|chr2 ( 161) 264 70.1 6.1e-13
CCDS47044.1 UBE2K gene_id:3093|Hs108|chr4 ( 149) 249 66.5 6.7e-12
CCDS6546.1 UBE2R2 gene_id:54926|Hs108|chr9 ( 238) 245 65.7 1.9e-11
CCDS33586.1 UBE2G2 gene_id:7327|Hs108|chr21 ( 137) 241 64.6 2.3e-11
CCDS11540.2 UBE2Z gene_id:65264|Hs108|chr17 ( 354) 245 65.8 2.6e-11
CCDS14.1 UBE2J2 gene_id:118424|Hs108|chr1 ( 259) 240 64.5 4.6e-11
CCDS5021.1 UBE2J1 gene_id:51465|Hs108|chr6 ( 318) 239 64.4 6.4e-11
CCDS12030.1 CDC34 gene_id:997|Hs108|chr19 ( 236) 236 63.6 8.3e-11
>>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa)
initn: 1036 init1: 1036 opt: 1036 Z-score: 1337.5 bits: 253.5 E(32554): 3.5e-68
Smith-Waterman score: 1036; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB5 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB5 PEIARIYKTDRDKYNRISREWTQKYAM
:::::::::::::::::::::::::::
CCDS36 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa)
initn: 1024 init1: 1024 opt: 1024 Z-score: 1322.0 bits: 250.6 E(32554): 2.6e-67
Smith-Waterman score: 1024; 98.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB5 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB5 PEIARIYKTDRDKYNRISREWTQKYAM
::::::::::::::::..::::.::::
CCDS36 PEIARIYKTDRDKYNRLAREWTEKYAML
130 140
>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa)
initn: 1016 init1: 1016 opt: 1016 Z-score: 1311.8 bits: 248.7 E(32554): 9.5e-67
Smith-Waterman score: 1016; 97.3% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB5 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB5 PEIARIYKTDRDKYNRISREWTQKYAM
:::::::::::.:::::.:::::::::
CCDS43 PEIARIYKTDREKYNRIAREWTQKYAM
130 140
>>CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 (149 aa)
initn: 999 init1: 999 opt: 999 Z-score: 1289.9 bits: 244.7 E(32554): 1.6e-65
Smith-Waterman score: 999; 97.9% identity (99.3% similar) in 144 aa overlap (4-147:6-149)
10 20 30 40 50
pF1KB5 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
: ..:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
70 80 90 100 110 120
120 130 140
pF1KB5 LVPEIARIYKTDRDKYNRISREWTQKYAM
:::::::::::::::::::::::::::::
CCDS36 LVPEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 980 init1: 980 opt: 980 Z-score: 1265.6 bits: 240.2 E(32554): 3.6e-64
Smith-Waterman score: 980; 91.8% identity (98.6% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB5 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:: :::::::::::::::.::::::::::::::::::::::::::::::
CCDS54 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
:::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS54 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB5 PEIARIYKTDRDKYNRISREWTQKYAM
::::. ::.::.::::..:::::::::
CCDS54 PEIAHTYKADREKYNRLAREWTQKYAM
130 140
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 950 init1: 950 opt: 950 Z-score: 1227.1 bits: 233.0 E(32554): 5e-62
Smith-Waterman score: 950; 88.4% identity (97.3% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB5 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::::: :::::.:::::::::.:::::::::: :: :::::::::.::::::
CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
::::::.::::.::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS72 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KB5 PEIARIYKTDRDKYNRISREWTQKYAM
:.::.:::.:..:::: .:::::::::
CCDS72 PDIAQIYKSDKEKYNRHAREWTQKYAM
130 140
>>CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 (118 aa)
initn: 837 init1: 837 opt: 837 Z-score: 1083.4 bits: 206.1 E(32554): 5e-54
Smith-Waterman score: 837; 100.0% identity (100.0% similar) in 118 aa overlap (30-147:1-118)
10 20 30 40 50 60
pF1KB5 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
:::::::::::::::::::::::::::::::
CCDS75 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30
70 80 90 100 110 120
pF1KB5 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
40 50 60 70 80 90
130 140
pF1KB5 PEIARIYKTDRDKYNRISREWTQKYAM
:::::::::::::::::::::::::::
CCDS75 PEIARIYKTDRDKYNRISREWTQKYAM
100 110
>>CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 (118 aa)
initn: 827 init1: 827 opt: 827 Z-score: 1070.6 bits: 203.8 E(32554): 2.6e-53
Smith-Waterman score: 827; 98.3% identity (100.0% similar) in 118 aa overlap (30-147:1-118)
10 20 30 40 50 60
pF1KB5 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
:::::::::::::::::::::::::::::::
CCDS47 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30
70 80 90 100 110 120
pF1KB5 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
40 50 60 70 80 90
130 140
pF1KB5 PEIARIYKTDRDKYNRISREWTQKYAM
:::::::::::.:::::.:::::::::
CCDS47 PEIARIYKTDREKYNRIAREWTQKYAM
100 110
>>CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 (109 aa)
initn: 689 init1: 689 opt: 692 Z-score: 897.7 bits: 171.7 E(32554): 1.1e-43
Smith-Waterman score: 692; 87.3% identity (96.4% similar) in 110 aa overlap (38-147:1-109)
10 20 30 40 50 60
pF1KB5 KELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV
: : :: :::::::::.::::::::::::.
CCDS73 MTP-DSAYQGGVFFLTVHFPTDYPFKPPKI
10 20
70 80 90 100 110 120
pF1KB5 AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY
::::.::::::::::::::::::::::::::.::::::::::::::::::::::.::.::
CCDS73 AFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIY
30 40 50 60 70 80
130 140
pF1KB5 KTDRDKYNRISREWTQKYAM
:.:..:::: .:::::::::
CCDS73 KSDKEKYNRHAREWTQKYAM
90 100
>>CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 (207 aa)
initn: 664 init1: 664 opt: 664 Z-score: 857.8 bits: 165.2 E(32554): 1.9e-41
Smith-Waterman score: 664; 65.7% identity (85.3% similar) in 143 aa overlap (4-146:64-206)
10 20 30
pF1KB5 MALKRINKELSDLARDPPAQCSAGPVGDDMFHW
:::.:::.... ::: .::::: ::....:
CCDS22 EQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEW
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB5 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQW
..::.:: : :.:::::: : : .:::::::::.: ::::: ::::.: ::::::...:
CCDS22 RSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW
100 110 120 130 140 150
100 110 120 130 140
pF1KB5 SPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM
::::::::::::::::: : :: :::: :: : :.: ...::.:.::..::
CCDS22 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYAT
160 170 180 190 200
147 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:00:57 2016 done: Sat Nov 5 13:00:57 2016
Total Scan time: 1.790 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]