FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5539, 561 aa
  1>>>pF1KB5539 561 - 561 aa - 561 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6647+/-0.000909; mu= 12.5954+/- 0.055
 mean_var=94.0514+/-19.227, 0's: 0 Z-trim(108.0): 54  B-trim: 0 in 0/51
 Lambda= 0.132249
 statistics sampled from 9883 (9930) to 9883 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.305), width:  16
 Scan time:  2.390

The best scores are:                                      opt bits E(32554)
CCDS41394.1 TDRKH gene_id:11022|Hs108|chr1         ( 561) 3669 710.4 1.5e-204
CCDS41395.1 TDRKH gene_id:11022|Hs108|chr1         ( 516) 2712 527.8 1.3e-149
CCDS7588.1 TDRD1 gene_id:56165|Hs108|chr10         (1189)  301 67.9 7.8e-11


>>CCDS41394.1 TDRKH gene_id:11022|Hs108|chr1              (561 aa)
 initn: 3669 init1: 3669 opt: 3669  Z-score: 3786.0  bits: 710.4 E(32554): 1.5e-204
Smith-Waterman score: 3669; 100.0% identity (100.0% similar) in 561 aa overlap (1-561:1-561)

               10        20        30        40        50        60
pF1KB5 MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAIHQILT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAIHQILT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 KEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDMTEPGGAGEPALWKNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDMTEPGGAGEPALWKNT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 SSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSPDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSPDF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 SFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 AAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 LARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 DIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETKKSSGEITHTLSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETKKSSGEITHTLSC
              490       500       510       520       530       540

              550       560 
pF1KB5 LSLSEAASMSGDDNLEDDYLL
       :::::::::::::::::::::
CCDS41 LSLSEAASMSGDDNLEDDYLL
              550       560 

>>CCDS41395.1 TDRKH gene_id:11022|Hs108|chr1              (516 aa)
 initn: 2710 init1: 2710 opt: 2712  Z-score: 2799.8  bits: 527.8 E(32554): 1.3e-149
Smith-Waterman score: 3279; 92.0% identity (92.0% similar) in 561 aa overlap (1-561:1-516)

               10        20        30        40        50        60
pF1KB5 MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAIHQILT
       :::::::::::::::::::::::::::::::::::::::::::::::             
CCDS41 QEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQ-------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KB5 ENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQ
                                       ::::::::::::::::::::::::::::
CCDS41 --------------------------------ASGAKITCDKESEGTLLLSRLIKISGTQ
                                       110       120       130     

              190       200       210       220       230       240
pF1KB5 KEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDMTEPGGAGEPALWKNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDMTEPGGAGEPALWKNT
         140       150       160       170       180       190     

              250       260       270       280       290       300
pF1KB5 SSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSPDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSPDF
         200       210       220       230       240       250     

              310       320       330       340       350       360
pF1KB5 SFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIV
         260       270       280       290       300       310     

              370       380       390       400       410       420
pF1KB5 AAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS
         320       330       340       350       360       370     

              430       440       450       460       470       480
pF1KB5 LARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKL
         380       390       400       410       420       430     

              490       500       510       520       530       540
pF1KB5 DIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETKKSSGEITHTLSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETKKSSGEITHTLSC
         440       450       460       470       480       490     

              550       560 
pF1KB5 LSLSEAASMSGDDNLEDDYLL
       :::::::::::::::::::::
CCDS41 LSLSEAASMSGDDNLEDDYLL
         500       510      

>>CCDS7588.1 TDRD1 gene_id:56165|Hs108|chr10              (1189 aa)
 initn: 224 init1: 224 opt: 301  Z-score: 308.0  bits: 67.9 E(32554): 7.8e-11
Smith-Waterman score: 301; 31.2% identity (64.4% similar) in 160 aa overlap (305-463:713-869)

          280       290       300       310       320       330    
pF1KB5 SDDSFQKSEAQAIPEMPMFEIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQ-L
                                     :. ..: : .   :..:. ...   .:. :
CCDS75 KPSDVKETSVPLGVEGKVNPLEWTWVELGVDQTVDVVVCVIYSPGEFYCHVLKEDALKKL
            690       700       710       720       730       740  

           340       350       360       370       380       390   
pF1KB5 DKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGD
       . : . ...: ....:. . ...:.   : .  .:::::: :   : ::.. ..:::.:.
CCDS75 NDLNKSLAEHCQQKLPNGFKAEIGQPCCAFFAGDGSWYRALVKEILPNGHVKVHFVDYGN
            750       760       770       780       790       800  

           400       410       420       430       440       450   
pF1KB5 NGDCPLKDLRALRSDFLSLPFQAIECSLARIAPSGDQWEEEALDEFDRLTHCADWKPLVA
         .    .:: . : ::.::::.:.:.:: :   . .: :::. .:.    :.    : :
CCDS75 IEEVTADELRMISSTFLNLPFQGIRCQLADIQSRNKHWSEEAITRFQ---MCVAGIKLQA
            810       820       830       840          850         

           460       470       480       490       500       510   
pF1KB5 KISSYVQTGISTWPKIYLYDTSNGKKLDIGLELVHKGYAIELPEDIEENRAVPDMLKDMA
       ..   ...::                                                  
CCDS75 RVVEVTENGIGVELTDLSTCYPRIISDVLIDEHLVLKSASPHKDLPNDRLVNKHELQVHV
     860       870       880       890       900       910         




561 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:04:41 2016 done: Sat Nov  5 13:04:41 2016
 Total Scan time:  2.390 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]