Result of FASTA (ccds) for
pF1KB5554
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5554, 298 aa
1>>>pF1KB5554 298 - 298 aa - 298 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4093+/-0.00125; mu= 9.7441+/- 0.074
mean_var=104.0369+/-19.891, 0's: 0 Z-trim(103.2): 102 B-trim: 179 in 1/49
Lambda= 0.125742
statistics sampled from 7193 (7286) to 7193 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.224), width: 16
Scan time: 2.080
The best scores are: opt bits E(32554)
CCDS6172.1 SDCBP gene_id:6386|Hs108|chr8 ( 298) 1923 359.9 1.3e-99
CCDS47862.1 SDCBP gene_id:6386|Hs108|chr8 ( 297) 1904 356.4 1.4e-98
CCDS83298.1 SDCBP gene_id:6386|Hs108|chr8 ( 318) 1904 356.5 1.5e-98
CCDS47863.1 SDCBP gene_id:6386|Hs108|chr8 ( 292) 1865 349.4 1.9e-96
CCDS42848.1 SDCBP2 gene_id:27111|Hs108|chr20 ( 292) 1158 221.1 7.8e-58
CCDS13013.1 SDCBP2 gene_id:27111|Hs108|chr20 ( 207) 993 191.1 6.1e-49
>>CCDS6172.1 SDCBP gene_id:6386|Hs108|chr8 (298 aa)
initn: 1923 init1: 1923 opt: 1923 Z-score: 1901.6 bits: 359.9 E(32554): 1.3e-99
Smith-Waterman score: 1923; 100.0% identity (100.0% similar) in 298 aa overlap (1-298:1-298)
10 20 30 40 50 60
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
190 200 210 220 230 240
250 260 270 280 290
pF1KB5 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
250 260 270 280 290
>>CCDS47862.1 SDCBP gene_id:6386|Hs108|chr8 (297 aa)
initn: 1902 init1: 1401 opt: 1904 Z-score: 1883.0 bits: 356.4 E(32554): 1.4e-98
Smith-Waterman score: 1904; 99.7% identity (99.7% similar) in 298 aa overlap (1-298:1-297)
10 20 30 40 50 60
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS47 LNEEEIRANVAVVSGAPLQG-LVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
70 80 90 100 110
130 140 150 160 170 180
pF1KB5 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
180 190 200 210 220 230
250 260 270 280 290
pF1KB5 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
240 250 260 270 280 290
>>CCDS83298.1 SDCBP gene_id:6386|Hs108|chr8 (318 aa)
initn: 1902 init1: 1401 opt: 1904 Z-score: 1882.6 bits: 356.5 E(32554): 1.5e-98
Smith-Waterman score: 1904; 99.7% identity (99.7% similar) in 298 aa overlap (1-298:22-318)
10 20 30
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPI
:::::::::::::::::::::::::::::::::::::::
CCDS83 MIKLWTNRDLHIIVMVKNPAKMSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPI
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 PHDGNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGN
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS83 PHDGNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQG-LVARPSSINYMVAPVTGN
70 80 90 100 110
100 110 120 130 140 150
pF1KB5 DVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVL
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB5 QINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 QINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKIT
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB5 SIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHII
240 250 260 270 280 290
280 290
pF1KB5 KRMAPSIMKSLMDHTIPEV
:::::::::::::::::::
CCDS83 KRMAPSIMKSLMDHTIPEV
300 310
>>CCDS47863.1 SDCBP gene_id:6386|Hs108|chr8 (292 aa)
initn: 1821 init1: 1821 opt: 1865 Z-score: 1844.9 bits: 349.4 E(32554): 1.9e-96
Smith-Waterman score: 1865; 98.0% identity (98.0% similar) in 298 aa overlap (1-298:1-292)
10 20 30 40 50 60
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
::::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSLYPSLEDLK------AQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
180 190 200 210 220 230
250 260 270 280 290
pF1KB5 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
240 250 260 270 280 290
>>CCDS42848.1 SDCBP2 gene_id:27111|Hs108|chr20 (292 aa)
initn: 1140 init1: 993 opt: 1158 Z-score: 1151.8 bits: 221.1 E(32554): 7.8e-58
Smith-Waterman score: 1158; 58.4% identity (83.4% similar) in 296 aa overlap (2-297:3-291)
10 20 30 40 50
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGL
::::::::::::..::::. :.: ::. .:.: : ::: : :: .::::
CCDS42 MSSLYPSLEDLKVDQAIQAQV--RASPKMPALPVQATAISP-PPVLYPNL-AELENYMGL
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 SLNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCK
::. .:.. .. . : . .. . . ::::::: ..:.:::::: :.::. :::
CCDS42 SLSSQEVQESLLQI---PEGDSTAVSGPGPGQMVAPVTGYSLGVRRAEIKPGVREIHLCK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 DQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLK
:. :: ::::...:.:.::::::::.::::::::::::.:::.:..:::::: :::.:.:
CCDS42 DERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 QAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNIC
.: :.::....:::::.::.:::::: :::::..:.:::.:.:: ::::::::::.: .:
CCDS42 KASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVC
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB5 EINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
:..:::::::::..: .::.:.:.:::.::.:. :.::..:.. : ... :::.::.
CCDS42 EVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA
240 250 260 270 280 290
>>CCDS13013.1 SDCBP2 gene_id:27111|Hs108|chr20 (207 aa)
initn: 1013 init1: 993 opt: 993 Z-score: 992.2 bits: 191.1 E(32554): 6.1e-49
Smith-Waterman score: 993; 66.0% identity (92.2% similar) in 206 aa overlap (92-297:1-206)
70 80 90 100 110 120
pF1KB5 NEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKDQ
::::::: ..:.:::::: :.::. ::::.
CCDS13 MVAPVTGYSLGVRRAEIKPGVREIHLCKDE
10 20 30
130 140 150 160 170 180
pF1KB5 DGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA
:: ::::...:.:.::::::::.::::::::::::.:::.:..:::::: :::.:.:.:
CCDS13 RGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKA
40 50 60 70 80 90
190 200 210 220 230 240
pF1KB5 FGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEI
:.::....:::::.::.:::::: :::::..:.:::.:.:: ::::::::::.: .::.
CCDS13 SGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEV
100 110 120 130 140 150
250 260 270 280 290
pF1KB5 NGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
.:::::::::..: .::.:.:.:::.::.:. :.::..:.. : ... :::.::.
CCDS13 DGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA
160 170 180 190 200
298 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:52:52 2016 done: Fri Nov 4 03:52:52 2016
Total Scan time: 2.080 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]