Result of FASTA (ccds) for
pF1KB5557
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5557, 464 aa
1>>>pF1KB5557 464 - 464 aa - 464 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7268+/-0.000915; mu= 16.6620+/- 0.055
mean_var=98.9685+/-19.384, 0's: 0 Z-trim(108.7): 76 B-trim: 0 in 0/51
Lambda= 0.128922
statistics sampled from 10303 (10379) to 10303 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.319), width: 16
Scan time: 2.890
The best scores are: opt bits E(32554)
CCDS14245.1 SRPX gene_id:8406|Hs108|chrX ( 464) 3218 609.1 3.1e-174
CCDS55400.1 SRPX gene_id:8406|Hs108|chrX ( 444) 2863 543.0 2.3e-154
CCDS55402.1 SRPX gene_id:8406|Hs108|chrX ( 379) 2565 487.6 9.7e-138
CCDS55401.1 SRPX gene_id:8406|Hs108|chrX ( 405) 2043 390.5 1.7e-108
CCDS14471.1 SRPX2 gene_id:27286|Hs108|chrX ( 465) 1542 297.4 2.1e-80
>>CCDS14245.1 SRPX gene_id:8406|Hs108|chrX (464 aa)
initn: 3218 init1: 3218 opt: 3218 Z-score: 3241.5 bits: 609.1 E(32554): 3.1e-174
Smith-Waterman score: 3218; 100.0% identity (100.0% similar) in 464 aa overlap (1-464:1-464)
10 20 30 40 50 60
pF1KB5 MGSPAHRPALLLLLPPLLLLLLLRVPPSRSFPGSGDSPLEDDEVGYSHPRYKDTPWCSPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MGSPAHRPALLLLLPPLLLLLLLRVPPSRSFPGSGDSPLEDDEVGYSHPRYKDTPWCSPI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 KVKYGDVYCRAPQGGYYKTALGTRCDIRCQKGYELHGSSLLICQSNKRWSDKVICKQKRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KVKYGDVYCRAPQGGYYKTALGTRCDIRCQKGYELHGSSLLICQSNKRWSDKVICKQKRC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 PTLAMPANGGFKCVDGAYFNSRCEYYCSPGYTLKGERTVTCMDNKAWSGRPASCVDMEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PTLAMPANGGFKCVDGAYFNSRCEYYCSPGYTLKGERTVTCMDNKAWSGRPASCVDMEPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 RIKCPSVKERIAEPNKLTVRVSWETPEGRDTADGILTDVILKGLPPGSNFPEGDHKIQYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RIKCPSVKERIAEPNKLTVRVSWETPEGRDTADGILTDVILKGLPPGSNFPEGDHKIQYT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 VYDRAENKGTCKFRVKVRVKRCGKLNAPENGYMKCSSDGDNYGATCEFSCIGGYELQGSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VYDRAENKGTCKFRVKVRVKRCGKLNAPENGYMKCSSDGDNYGATCEFSCIGGYELQGSP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 ARVCQSNLAWSGTEPTCAAMNVNVGVRTAAALLDQFYEKRRLLIVSTPTARNLLYRLQLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ARVCQSNLAWSGTEPTCAAMNVNVGVRTAAALLDQFYEKRRLLIVSTPTARNLLYRLQLG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 MLQQAQCGLDLRHITVVELVGVFPTLIGRIGAKIMPPALALQLRLLLRIPLYSFSMVLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MLQQAQCGLDLRHITVVELVGVFPTLIGRIGAKIMPPALALQLRLLLRIPLYSFSMVLVD
370 380 390 400 410 420
430 440 450 460
pF1KB5 KHGMDKERYVSLVMPVALFNLIDTFPLRKEEMVLQAEMSQTCNT
::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KHGMDKERYVSLVMPVALFNLIDTFPLRKEEMVLQAEMSQTCNT
430 440 450 460
>>CCDS55400.1 SRPX gene_id:8406|Hs108|chrX (444 aa)
initn: 2902 init1: 2863 opt: 2863 Z-score: 2885.0 bits: 543.0 E(32554): 2.3e-154
Smith-Waterman score: 3024; 95.7% identity (95.7% similar) in 464 aa overlap (1-464:1-444)
10 20 30 40 50 60
pF1KB5 MGSPAHRPALLLLLPPLLLLLLLRVPPSRSFPGSGDSPLEDDEVGYSHPRYKDTPWCSPI
:::::::::::::::::::::::::::::::: ::::::::
CCDS55 MGSPAHRPALLLLLPPLLLLLLLRVPPSRSFP--------------------DTPWCSPI
10 20 30 40
70 80 90 100 110 120
pF1KB5 KVKYGDVYCRAPQGGYYKTALGTRCDIRCQKGYELHGSSLLICQSNKRWSDKVICKQKRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KVKYGDVYCRAPQGGYYKTALGTRCDIRCQKGYELHGSSLLICQSNKRWSDKVICKQKRC
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 PTLAMPANGGFKCVDGAYFNSRCEYYCSPGYTLKGERTVTCMDNKAWSGRPASCVDMEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PTLAMPANGGFKCVDGAYFNSRCEYYCSPGYTLKGERTVTCMDNKAWSGRPASCVDMEPP
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 RIKCPSVKERIAEPNKLTVRVSWETPEGRDTADGILTDVILKGLPPGSNFPEGDHKIQYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RIKCPSVKERIAEPNKLTVRVSWETPEGRDTADGILTDVILKGLPPGSNFPEGDHKIQYT
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB5 VYDRAENKGTCKFRVKVRVKRCGKLNAPENGYMKCSSDGDNYGATCEFSCIGGYELQGSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VYDRAENKGTCKFRVKVRVKRCGKLNAPENGYMKCSSDGDNYGATCEFSCIGGYELQGSP
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB5 ARVCQSNLAWSGTEPTCAAMNVNVGVRTAAALLDQFYEKRRLLIVSTPTARNLLYRLQLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ARVCQSNLAWSGTEPTCAAMNVNVGVRTAAALLDQFYEKRRLLIVSTPTARNLLYRLQLG
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB5 MLQQAQCGLDLRHITVVELVGVFPTLIGRIGAKIMPPALALQLRLLLRIPLYSFSMVLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MLQQAQCGLDLRHITVVELVGVFPTLIGRIGAKIMPPALALQLRLLLRIPLYSFSMVLVD
350 360 370 380 390 400
430 440 450 460
pF1KB5 KHGMDKERYVSLVMPVALFNLIDTFPLRKEEMVLQAEMSQTCNT
::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KHGMDKERYVSLVMPVALFNLIDTFPLRKEEMVLQAEMSQTCNT
410 420 430 440
>>CCDS55402.1 SRPX gene_id:8406|Hs108|chrX (379 aa)
initn: 2565 init1: 2565 opt: 2565 Z-score: 2586.3 bits: 487.6 E(32554): 9.7e-138
Smith-Waterman score: 2565; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363)
10 20 30 40 50 60
pF1KB5 MGSPAHRPALLLLLPPLLLLLLLRVPPSRSFPGSGDSPLEDDEVGYSHPRYKDTPWCSPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MGSPAHRPALLLLLPPLLLLLLLRVPPSRSFPGSGDSPLEDDEVGYSHPRYKDTPWCSPI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 KVKYGDVYCRAPQGGYYKTALGTRCDIRCQKGYELHGSSLLICQSNKRWSDKVICKQKRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KVKYGDVYCRAPQGGYYKTALGTRCDIRCQKGYELHGSSLLICQSNKRWSDKVICKQKRC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 PTLAMPANGGFKCVDGAYFNSRCEYYCSPGYTLKGERTVTCMDNKAWSGRPASCVDMEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PTLAMPANGGFKCVDGAYFNSRCEYYCSPGYTLKGERTVTCMDNKAWSGRPASCVDMEPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 RIKCPSVKERIAEPNKLTVRVSWETPEGRDTADGILTDVILKGLPPGSNFPEGDHKIQYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RIKCPSVKERIAEPNKLTVRVSWETPEGRDTADGILTDVILKGLPPGSNFPEGDHKIQYT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 VYDRAENKGTCKFRVKVRVKRCGKLNAPENGYMKCSSDGDNYGATCEFSCIGGYELQGSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VYDRAENKGTCKFRVKVRVKRCGKLNAPENGYMKCSSDGDNYGATCEFSCIGGYELQGSP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 ARVCQSNLAWSGTEPTCAAMNVNVGVRTAAALLDQFYEKRRLLIVSTPTARNLLYRLQLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ARVCQSNLAWSGTEPTCAAMNVNVGVRTAAALLDQFYEKRRLLIVSTPTARNLLYRLQLG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 MLQQAQCGLDLRHITVVELVGVFPTLIGRIGAKIMPPALALQLRLLLRIPLYSFSMVLVD
:::
CCDS55 MLQAVAANPTLLLQYGASG
370
>>CCDS55401.1 SRPX gene_id:8406|Hs108|chrX (405 aa)
initn: 2070 init1: 1943 opt: 2043 Z-score: 2061.2 bits: 390.5 E(32554): 1.7e-108
Smith-Waterman score: 2642; 87.1% identity (87.3% similar) in 464 aa overlap (1-464:1-405)
10 20 30 40 50 60
pF1KB5 MGSPAHRPALLLLLPPLLLLLLLRVPPSRSFPGSGDSPLEDDEVGYSHPRYKDTPWCSPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MGSPAHRPALLLLLPPLLLLLLLRVPPSRSFPGSGDSPLEDDEVGYSHPRYKDTPWCSPI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 KVKYGDVYCRAPQGGYYKTALGTRCDIRCQKGYELHGSSLLICQSNKRWSDKVICKQKRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
CCDS55 KVKYGDVYCRAPQGGYYKTALGTRCDIRCQKGYELHGSSLLICQSNKRWSDKVICKH---
70 80 90 100 110
130 140 150 160 170 180
pF1KB5 PTLAMPANGGFKCVDGAYFNSRCEYYCSPGYTLKGERTVTCMDNKAWSGRPASCVDMEPP
::::
CCDS55 --------------------------------------------------------MEPP
120
190 200 210 220 230 240
pF1KB5 RIKCPSVKERIAEPNKLTVRVSWETPEGRDTADGILTDVILKGLPPGSNFPEGDHKIQYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RIKCPSVKERIAEPNKLTVRVSWETPEGRDTADGILTDVILKGLPPGSNFPEGDHKIQYT
130 140 150 160 170 180
250 260 270 280 290 300
pF1KB5 VYDRAENKGTCKFRVKVRVKRCGKLNAPENGYMKCSSDGDNYGATCEFSCIGGYELQGSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VYDRAENKGTCKFRVKVRVKRCGKLNAPENGYMKCSSDGDNYGATCEFSCIGGYELQGSP
190 200 210 220 230 240
310 320 330 340 350 360
pF1KB5 ARVCQSNLAWSGTEPTCAAMNVNVGVRTAAALLDQFYEKRRLLIVSTPTARNLLYRLQLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ARVCQSNLAWSGTEPTCAAMNVNVGVRTAAALLDQFYEKRRLLIVSTPTARNLLYRLQLG
250 260 270 280 290 300
370 380 390 400 410 420
pF1KB5 MLQQAQCGLDLRHITVVELVGVFPTLIGRIGAKIMPPALALQLRLLLRIPLYSFSMVLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MLQQAQCGLDLRHITVVELVGVFPTLIGRIGAKIMPPALALQLRLLLRIPLYSFSMVLVD
310 320 330 340 350 360
430 440 450 460
pF1KB5 KHGMDKERYVSLVMPVALFNLIDTFPLRKEEMVLQAEMSQTCNT
::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KHGMDKERYVSLVMPVALFNLIDTFPLRKEEMVLQAEMSQTCNT
370 380 390 400
>>CCDS14471.1 SRPX2 gene_id:27286|Hs108|chrX (465 aa)
initn: 1747 init1: 1521 opt: 1542 Z-score: 1556.8 bits: 297.4 E(32554): 2.1e-80
Smith-Waterman score: 1542; 45.9% identity (73.1% similar) in 453 aa overlap (17-462:13-464)
10 20 30 40 50
pF1KB5 MGSPAHRPALLLLLPPLLLLLLLRVPPSRSFPGSGDSPLEDDEVGYSH--PR-----YKD
::..: : :. . ::: : :. . :.. :. :.
CCDS14 MASQLTQRGALFLLFFLTPAVTPTW-YAGSGYYPDESYNEVYAEEVPQAPALDYRV
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 TPWCSPIKVKYGDVYCRAPQGGYYKTALGTRCDIRCQKGYELHGSSLLICQSNKRWSDKV
:: .... :.. : .:.:: :...:::::.. :..:..: : . : ..::: .
CCDS14 PRWCYTLNIQDGEATCYSPKGGNYHSSLGTRCELSCDRGFRLIGRRSVQCLPSRRWSGTA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 ICKQKRCPTLAMPANGGFKCVDGAYFNSRCEYYCSPGYTLKGERTVTCMDNKAWSGRPAS
:.: :: .: . ..: . :..:. ..:::.: :: :: :.:.:. ::.. :::
CCDS14 YCRQMRCHALPFITSGTYTCTNGVLLDSRCDYSCSSGYHLEGDRSRICMEDGRWSGGEPV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 CVDMEPPRIKCPSVKERIAEPNKLTVRVSWETPEGRDTADGILTDVILKGLPPGSNFPEG
:::..::.:.:: .:..:::.:::.:: :. : .:.::: .: : :.: :::.::::
CCDS14 CVDIDPPKIRCPHSREKMAEPEKLTARVYWDPPLVKDSADGTITRVTLRGPEPGSHFPEG
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB5 DHKIQYTVYDRAENKGTCKFRVKVRVKRCGKLNAPENGYMKCSSDGDNYGATCEFSCIGG
.: :.::.:::: :...::: :::.:.:: :. :..::. :.: :::::::::. : ::
CCDS14 EHVIRYTAYDRAYNRASCKFIVKVQVRRCPTLKPPQHGYLTCTSAGDNYGATCEYHCDGG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB5 YELQGSPARVCQSNLAWSGTEPTCAAMNVNVGVRTAAALLDQFYEKRRLLIVSTPTARNL
:. ::.:.:::::. :::. : :: :..::.: .::.::::::::.::::.:.: :
CCDS14 YDRQGTPSRVCQSSRQWSGSPPICAPMKINVNVNSAAGLLDQFYEKQRLLIISAPDPSNR
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB5 LYRLQLGMLQQAQCGLDLRHITVVELVGVFPTLIGRIGAKIMPPALALQLRLLLRIPLYS
:..:..::::. :::::::.:..:::: : .::: . . . .:: . :.
CCDS14 YYKMQISMLQQSTCGLDLRHVTIIELVGQPPQEVGRIREQQLSANIIEELRQFQRLTRSY
360 370 380 390 400 410
420 430 440 450 460
pF1KB5 FSMVLVDKHGMDKERYVSLVMPVALFNLIDTFPLRKEEMVLQAEMSQTCNT
:.:::.::.:.:..::. : : .:..:: . : ..:.. . :. . :
CCDS14 FNMVLIDKQGIDRDRYMEPVTPEEIFTFIDDYLLSNQELTQRREQRDICE
420 430 440 450 460
464 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:05:52 2016 done: Sat Nov 5 13:05:52 2016
Total Scan time: 2.890 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]