FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5566, 264 aa
  1>>>pF1KB5566 264 - 264 aa - 264 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6151+/-0.000852; mu= 13.2249+/- 0.051
 mean_var=62.9126+/-12.776, 0's: 0 Z-trim(106.8): 21  B-trim: 116 in 2/48
 Lambda= 0.161698
 statistics sampled from 9188 (9203) to 9188 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.283), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS996.1 PSMB4 gene_id:5692|Hs108|chr1            ( 264) 1755 417.8 3.9e-117


>>CCDS996.1 PSMB4 gene_id:5692|Hs108|chr1                 (264 aa)
 initn: 1755 init1: 1755 opt: 1755  Z-score: 2216.3  bits: 417.8 E(32554): 3.9e-117
Smith-Waterman score: 1755; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KB5 MEAFLGSRSGLWAGGPAPGQFYRIPSTPDSFMDPASALYRGPITRTQNPMVTGTSVLGVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MEAFLGSRSGLWAGGPAPGQFYRIPSTPDSFMDPASALYRGPITRTQNPMVTGTSVLGVK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 FEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 FEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 LLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 SLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQIATVTEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 SLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQIATVTEK
              190       200       210       220       230       240

              250       260    
pF1KB5 GVEIEGPLSTETNWDIAHMISGFE
       ::::::::::::::::::::::::
CCDS99 GVEIEGPLSTETNWDIAHMISGFE
              250       260    




264 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:53:58 2016 done: Fri Nov  4 03:53:59 2016
 Total Scan time:  2.190 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]