FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5576, 164 aa
  1>>>pF1KB5576 164 - 164 aa - 164 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7017+/-0.000556; mu= 11.9077+/- 0.034
 mean_var=82.1607+/-16.198, 0's: 0 Z-trim(115.5): 5  B-trim: 97 in 1/50
 Lambda= 0.141495
 statistics sampled from 16078 (16082) to 16078 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.494), width:  16
 Scan time:  2.160

The best scores are:                                      opt bits E(32554)
CCDS4824.1 CDKN1A gene_id:1026|Hs108|chr6          ( 164) 1144 241.7 1.5e-64


>>CCDS4824.1 CDKN1A gene_id:1026|Hs108|chr6               (164 aa)
 initn: 1144 init1: 1144 opt: 1144  Z-score: 1272.4  bits: 241.7 E(32554): 1.5e-64
Smith-Waterman score: 1144; 98.8% identity (99.4% similar) in 164 aa overlap (1-164:1-164)

               10        20        30        40        50        60
pF1KB5 MSEPAGDVRQNPCGSKACRRLFGPVDSDQLRRDCDALMAGCIQEARERWNFDFVTETPLE
       :::::::::::::::::::::::::::.:: :::::::::::::::::::::::::::::
CCDS48 MSEPAGDVRQNPCGSKACRRLFGPVDSEQLSRDCDALMAGCIQEARERWNFDFVTETPLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 GDFAWERVRGLGLPKLYLPTGPRRGRDELGGGRRPGTSPALLQGTAEEDHVDLSLSCTLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 GDFAWERVRGLGLPKLYLPTGPRRGRDELGGGRRPGTSPALLQGTAEEDHVDLSLSCTLV
               70        80        90       100       110       120

              130       140       150       160    
pF1KB5 PRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHSKRRLIFSKRKP
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS48 PRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHSKRRLIFSKRKP
              130       140       150       160    




164 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 17:38:49 2016 done: Thu Nov  3 17:38:49 2016
 Total Scan time:  2.160 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]