FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5588, 725 aa
  1>>>pF1KB5588 725 - 725 aa - 725 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3364+/-0.000941; mu= 15.0772+/- 0.057
 mean_var=84.5373+/-17.047, 0's: 0 Z-trim(106.9): 22  B-trim: 375 in 1/50
 Lambda= 0.139492
 statistics sampled from 9222 (9236) to 9222 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.284), width:  16
 Scan time:  4.010

The best scores are:                                      opt bits E(32554)
CCDS10604.1 EEF2K gene_id:29904|Hs108|chr16        ( 725) 4961 1008.6       0


>>CCDS10604.1 EEF2K gene_id:29904|Hs108|chr16             (725 aa)
 initn: 4961 init1: 4961 opt: 4961  Z-score: 5393.7  bits: 1008.6 E(32554):    0
Smith-Waterman score: 4961; 99.9% identity (100.0% similar) in 725 aa overlap (1-725:1-725)

               10        20        30        40        50        60
pF1KB5 MADEDLIFRLEGVDGGQSPRAGHDGDSDGDSDDEEGYFICPITDDPSSNQNVNSKVNKYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MADEDLIFRLEGVDGGQSPRAGHDGDSDGDSDDEEGYFICPITDDPSSNQNVNSKVNKYY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SNLTKSERYSSSGSPANSFHFKEAWKHAIQKAKHMPDPWAEFHLEDIATERATRHRYNAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SNLTKSERYSSSGSPANSFHFKEAWKHAIQKAKHMPDPWAEFHLEDIATERATRHRYNAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 TGEWLDDEVLIKMASQPFGRGAMRECFRTKKLSNFLHAQQWKGASNYVAKRYIEPVDRDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TGEWLDDEVLIKMASQPFGRGAMRECFRTKKLSNFLHAQQWKGASNYVAKRYIEPVDRDV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 YFEDVRLQMEAKLWGEEYNRHKPPKQVDIMQMCIIELKDRPGKPLFHLEHYIEGKYIKYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YFEDVRLQMEAKLWGEEYNRHKPPKQVDIMQMCIIELKDRPGKPLFHLEHYIEGKYIKYN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 SNSGFVRDDNIRLTPQAFSHFTFERSGHQLIVVDIQGVGDLYTDPQIHTETGTDFGDGNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SNSGFVRDDNIRLTPQAFSHFTFERSGHQLIVVDIQGVGDLYTDPQIHTETGTDFGDGNL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 GVRGMALFFYSHACNRICESMGLAPFDLSPRERDAVNQNTKLLQSAKTILRGTEEKCGSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GVRGMALFFYSHACNRICESMGLAPFDLSPRERDAVNQNTKLLQSAKTILRGTEEKCGSP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 RVRTLSGSRPPLLRPLSENSGDENMSDVTFDSLPSSPSSATPHSQKLDHLHWPVFSDLDN
       .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QVRTLSGSRPPLLRPLSENSGDENMSDVTFDSLPSSPSSATPHSQKLDHLHWPVFSDLDN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 MASRDHDHLDNHRESENSGDSGYPSEKRGELDDPEPREHGHSYSNRKYESDEDSLGSSGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MASRDHDHLDNHRESENSGDSGYPSEKRGELDDPEPREHGHSYSNRKYESDEDSLGSSGR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 VCVEKWNLLNSSRLHLPRASAVALEVQRLNALDLEKKIGKSILGKVHLAMVRYHEGGRFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VCVEKWNLLNSSRLHLPRASAVALEVQRLNALDLEKKIGKSILGKVHLAMVRYHEGGRFC
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 EKGEEWDQESAVFHLEHAANLGELEAIVGLGLMYSQLPHHILADVSLKETEENKTKGFDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EKGEEWDQESAVFHLEHAANLGELEAIVGLGLMYSQLPHHILADVSLKETEENKTKGFDY
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 LLKAAEAGDRQSMILVARAFDSGQNLSPDRCQDWLEALHWYNTALEMTDCDEGGEYDGMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LLKAAEAGDRQSMILVARAFDSGQNLSPDRCQDWLEALHWYNTALEMTDCDEGGEYDGMQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 DEPRYMMLAREAEMLFTGGYGLEKDPQRSGDLYTQAAEAAMEAMKGRLANQYYQKAEEAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DEPRYMMLAREAEMLFTGGYGLEKDPQRSGDLYTQAAEAAMEAMKGRLANQYYQKAEEAW
              670       680       690       700       710       720

            
pF1KB5 AQMEE
       :::::
CCDS10 AQMEE
            




725 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:05:13 2016 done: Sat Nov  5 00:05:14 2016
 Total Scan time:  4.010 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]