FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5597, 462 aa
  1>>>pF1KB5597 462 - 462 aa - 462 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0706+/-0.000845; mu= 7.3623+/- 0.052
 mean_var=145.8468+/-29.301, 0's: 0 Z-trim(112.2): 3  B-trim: 633 in 1/55
 Lambda= 0.106200
 statistics sampled from 12967 (12970) to 12967 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.398), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS8787.1 MCRS1 gene_id:10445|Hs108|chr12         ( 462) 2999 470.6 1.5e-132
CCDS31795.1 MCRS1 gene_id:10445|Hs108|chr12        ( 475) 2978 467.4 1.4e-131
CCDS61118.1 MCRS1 gene_id:10445|Hs108|chr12        ( 271) 1766 281.6 6.8e-76


>>CCDS8787.1 MCRS1 gene_id:10445|Hs108|chr12              (462 aa)
 initn: 2999 init1: 2999 opt: 2999  Z-score: 2493.4  bits: 470.6 E(32554): 1.5e-132
Smith-Waterman score: 2999; 100.0% identity (100.0% similar) in 462 aa overlap (1-462:1-462)

               10        20        30        40        50        60
pF1KB5 MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 LVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 KSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 AFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKGDQVLNFSDAEDLIDDSKLKDMRDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 AFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKGDQVLNFSDAEDLIDDSKLKDMRDEV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LEHELMVADRRQKREIRQLEQELHKWQVLVDSITGMSSPDFDNQTLAVLRGRMVRYLMRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 LEHELMVADRRQKREIRQLEQELHKWQVLVDSITGMSSPDFDNQTLAVLRGRMVRYLMRS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 REITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 REITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVL
              370       380       390       400       410       420

              430       440       450       460  
pF1KB5 CGSKWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKITPQ
       ::::::::::::::::::::::::::::::::::::::::::
CCDS87 CGSKWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKITPQ
              430       440       450       460  

>>CCDS31795.1 MCRS1 gene_id:10445|Hs108|chr12             (475 aa)
 initn: 2978 init1: 2978 opt: 2978  Z-score: 2475.8  bits: 467.4 E(32554): 1.4e-131
Smith-Waterman score: 2978; 100.0% identity (100.0% similar) in 459 aa overlap (4-462:17-475)

                            10        20        30        40       
pF1KB5              MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRS
                       ::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MTRGTGGTAQRGRSGPDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRS
               10        20        30        40        50        60

        50        60        70        80        90       100       
pF1KB5 SSRFIKRKKFDDELVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SSRFIKRKKFDDELVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPP
               70        80        90       100       110       120

       110       120       130       140       150       160       
pF1KB5 SPAPAPGLTKRVKKSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SPAPAPGLTKRVKKSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFT
              130       140       150       160       170       180

       170       180       190       200       210       220       
pF1KB5 LREVQERWYALLYDPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LREVQERWYALLYDPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPT
              190       200       210       220       230       240

       230       240       250       260       270       280       
pF1KB5 LETFQDLLHRHPDAFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKGDQVLNFSDAEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LETFQDLLHRHPDAFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKGDQVLNFSDAEDL
              250       260       270       280       290       300

       290       300       310       320       330       340       
pF1KB5 IDDSKLKDMRDEVLEHELMVADRRQKREIRQLEQELHKWQVLVDSITGMSSPDFDNQTLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IDDSKLKDMRDEVLEHELMVADRRQKREIRQLEQELHKWQVLVDSITGMSSPDFDNQTLA
              310       320       330       340       350       360

       350       360       370       380       390       400       
pF1KB5 VLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNGDFFIANE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNGDFFIANE
              370       380       390       400       410       420

       410       420       430       440       450       460  
pF1KB5 GRRPIYIDGRPVLCGSKWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKITPQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GRRPIYIDGRPVLCGSKWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKITPQ
              430       440       450       460       470     

>>CCDS61118.1 MCRS1 gene_id:10445|Hs108|chr12             (271 aa)
 initn: 1766 init1: 1766 opt: 1766  Z-score: 1476.0  bits: 281.6 E(32554): 6.8e-76
Smith-Waterman score: 1766; 100.0% identity (100.0% similar) in 271 aa overlap (192-462:1-271)

             170       180       190       200       210       220 
pF1KB5 FSCRFTLREVQERWYALLYDPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVG
                                     ::::::::::::::::::::::::::::::
CCDS61                               MRQLHPEAIAAIQSKALFSKAEEQLLSKVG
                                             10        20        30

             230       240       250       260       270       280 
pF1KB5 STSQPTLETFQDLLHRHPDAFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKGDQVLNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 STSQPTLETFQDLLHRHPDAFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKGDQVLNF
               40        50        60        70        80        90

             290       300       310       320       330       340 
pF1KB5 SDAEDLIDDSKLKDMRDEVLEHELMVADRRQKREIRQLEQELHKWQVLVDSITGMSSPDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 SDAEDLIDDSKLKDMRDEVLEHELMVADRRQKREIRQLEQELHKWQVLVDSITGMSSPDF
              100       110       120       130       140       150

             350       360       370       380       390       400 
pF1KB5 DNQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 DNQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNGD
              160       170       180       190       200       210

             410       420       430       440       450       460 
pF1KB5 FFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKITP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 FFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKITP
              220       230       240       250       260       270

        
pF1KB5 Q
       :
CCDS61 Q
        




462 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:58:32 2016 done: Fri Nov  4 03:58:32 2016
 Total Scan time:  2.740 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]