FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5636, 331 aa
  1>>>pF1KB5636 331 - 331 aa - 331 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3418+/-0.00083; mu= 5.8385+/- 0.051
 mean_var=248.0063+/-50.196, 0's: 0 Z-trim(116.7): 32  B-trim: 0 in 0/51
 Lambda= 0.081441
 statistics sampled from 17276 (17308) to 17276 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.532), width:  16
 Scan time:  3.290

The best scores are:                                      opt bits E(32554)
CCDS547.1 TAL1 gene_id:6886|Hs108|chr1             ( 331) 2243 275.7 3.7e-74
CCDS12292.1 LYL1 gene_id:4066|Hs108|chr19          ( 280)  485 69.0   5e-12


>>CCDS547.1 TAL1 gene_id:6886|Hs108|chr1                  (331 aa)
 initn: 2243 init1: 2243 opt: 2243  Z-score: 1444.8  bits: 275.7 E(32554): 3.7e-74
Smith-Waterman score: 2243; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)

               10        20        30        40        50        60
pF1KB5 MTERPPSEAARSDPQLEGRDAAEASMAPPHLVLLNGVAKETSRAAAAEPPVIELGARGGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MTERPPSEAARSDPQLEGRDAAEASMAPPHLVLLNGVAKETSRAAAAEPPVIELGARGGP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 GGGPAGGGGAARDLKGRDAATAEARHRVPTTELCRPPGPAPAPAPASVTAELPGDGRMVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GGGPAGGGGAARDLKGRDAATAEARHRVPTTELCRPPGPAPAPAPASVTAELPGDGRMVQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LSPPALAAPAAPGRALLYSLSQPLASLGSGFFGEPDAFPMFTTNNRVKRRPSPYEMEITD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LSPPALAAPAAPGRALLYSLSQPLASLGSGFFGEPDAFPMFTTNNRVKRRPSPYEMEITD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 GPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 KLLNDQEEEGTQRAKTGKDPVVGAGGGGGGGGGGAPPDDLLQDVLSPNSSCGSSLDGAAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KLLNDQEEEGTQRAKTGKDPVVGAGGGGGGGGGGAPPDDLLQDVLSPNSSCGSSLDGAAS
              250       260       270       280       290       300

              310       320       330 
pF1KB5 PDSYTEEPAPKHTARSLHPAMLPAADGAGPR
       :::::::::::::::::::::::::::::::
CCDS54 PDSYTEEPAPKHTARSLHPAMLPAADGAGPR
              310       320       330 

>>CCDS12292.1 LYL1 gene_id:4066|Hs108|chr19               (280 aa)
 initn: 418 init1: 369 opt: 485  Z-score: 329.3  bits: 69.0 E(32554): 5e-12
Smith-Waterman score: 503; 39.0% identity (54.8% similar) in 305 aa overlap (5-301:3-267)

               10        20        30        40        50          
pF1KB5 MTERPPSEAARSDPQLEGRDAAEASMAPPHLVLLNGVAKETSRAAAAEPPVIELGARGG-
           ::.  :.  : .   . ::   ::       . :   . :. . : : :.: ::: 
CCDS12   MCPPQAQAEVGPTMT--EKAEMVCAPSP-----APAPPPKPASPGPPQVEEVGHRGGS
                 10          20             30        40        50 

       60        70        80        90         100       110      
pF1KB5 -PGGGPAGGGGAARDLKGRDAATAEARHRVPTTEL--CRPPGPAPAPAPASVTAELPGDG
        :   : :                     ::.  :   :::: :  :.    : . :   
CCDS12 SPPRLPPG---------------------VPVISLGHSRPPGVA-MPTTELGTLRPP---
                                   60        70         80         

        120       130       140       150       160       170      
pF1KB5 RMVQLSPPALAAPAAPGRALLYSLSQPLASLGSGFFGEPDAFPMFTTNNRVKRRPSPYEM
        ..:::  . : :.    :: :   .:   :.: ..:    : .: .. :.:::::  :.
CCDS12 -LLQLSTLGTAPPTL---ALHY---HPHPFLNSVYIGPAGPFSIFPSS-RLKRRPSHCEL
          90       100             110       120        130        

        180        190       200       210       220       230     
pF1KB5 EITDGPHT-KVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKY
       ....: .  ::.::.:::::::::::::::::::::::.::::::.::::::.:::::::
CCDS12 DLAEGHQPQKVARRVFTNSRERWRQQNVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKY
      140       150       160       170       180       190        

         240          250       260       270       280       290  
pF1KB5 INFLAKLLNDQEEE---GTQRAKTGKDPVVGAGGGGGGGGGGAPPDDLLQDVLSPNSSCG
       :.::..:: ::      :       : ::  .   :.  :.:   .   ..  .: ..  
CCDS12 IGFLVRLLRDQAAALAAGPTPPGPRKRPVHRVPDDGARRGSGRRAEAAARSQPAPPADPD
      200       210       220       230       240       250        

            300       310       320       330 
pF1KB5 SSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR
       .:  ::: :                              
CCDS12 GSPGGAARPIKMEQTALSPEVR                 
      260       270       280                 




331 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:59:47 2016 done: Fri Nov  4 03:59:48 2016
 Total Scan time:  3.290 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]