FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5643, 72 aa
  1>>>pF1KB5643 72 - 72 aa - 72 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9146+/-0.000592; mu= 8.3300+/- 0.036
 mean_var=45.6497+/- 9.066, 0's: 0 Z-trim(109.8): 20  B-trim: 0 in 0/50
 Lambda= 0.189826
 statistics sampled from 11160 (11179) to 11160 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.343), width:  16
 Scan time:  1.330

The best scores are:                                      opt bits E(32554)
CCDS30749.1 GNG12 gene_id:55970|Hs108|chr1         (  72)  451 130.2 1.1e-31
CCDS12091.1 GNG7 gene_id:2788|Hs108|chr19          (  68)  363 106.1 1.9e-24
CCDS32082.1 GNG2 gene_id:54331|Hs108|chr14         (  71)  291 86.4 1.7e-18
CCDS1607.1 GNG4 gene_id:2786|Hs108|chr1            (  75)  280 83.4 1.4e-17
CCDS8032.1 GNG3 gene_id:2785|Hs108|chr11           (  75)  272 81.2 6.5e-17
CCDS12687.1 GNG8 gene_id:94235|Hs108|chr19         (  70)  261 78.2 4.9e-16
CCDS696.1 GNG5 gene_id:2787|Hs108|chr1             (  68)  234 70.8   8e-14
CCDS35107.1 GNG10 gene_id:2790|Hs108|chr9          (  68)  222 67.5 7.8e-13


>>CCDS30749.1 GNG12 gene_id:55970|Hs108|chr1              (72 aa)
 initn: 451 init1: 451 opt: 451  Z-score: 682.4  bits: 130.2 E(32554): 1.1e-31
Smith-Waterman score: 451; 100.0% identity (100.0% similar) in 72 aa overlap (1-72:1-72)

               10        20        30        40        50        60
pF1KB5 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
               10        20        30        40        50        60

               70  
pF1KB5 NPFKDKKTCIIL
       ::::::::::::
CCDS30 NPFKDKKTCIIL
               70  

>>CCDS12091.1 GNG7 gene_id:2788|Hs108|chr19               (68 aa)
 initn: 363 init1: 363 opt: 363  Z-score: 552.6  bits: 106.1 E(32554): 1.9e-24
Smith-Waterman score: 363; 77.6% identity (97.0% similar) in 67 aa overlap (6-72:2-68)

               10        20        30        40        50        60
pF1KB5 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
            ..::::::::. :.:::.::.:::::::::..:::::::.:::.::::.:.:.::
CCDS12     MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASE
                   10        20        30        40        50      

               70  
pF1KB5 NPFKDKKTCIIL
       ::::::: ::::
CCDS12 NPFKDKKPCIIL
         60        

>>CCDS32082.1 GNG2 gene_id:54331|Hs108|chr14              (71 aa)
 initn: 291 init1: 283 opt: 291  Z-score: 445.7  bits: 86.4 E(32554): 1.7e-18
Smith-Waterman score: 291; 62.3% identity (85.5% similar) in 69 aa overlap (5-72:3-71)

               10        20        30        40        50        60
pF1KB5 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
           . .: .:::::. :.::..::.:.:::::::.::::.::: ::. ::::  .:.::
CCDS32   MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASE
                 10        20        30        40        50        

                70  
pF1KB5 NPFKDKKT-CIIL
       :::..::  : ::
CCDS32 NPFREKKFFCAIL
       60        70 

>>CCDS1607.1 GNG4 gene_id:2786|Hs108|chr1                 (75 aa)
 initn: 272 init1: 272 opt: 280  Z-score: 429.0  bits: 83.4 E(32554): 1.4e-17
Smith-Waterman score: 280; 58.2% identity (89.6% similar) in 67 aa overlap (7-72:9-75)

                 10        20        30        40        50        
pF1KB5   MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPT
               ::..:.:::..:.::..:: ..:.:::.:.:::..::: :.: :::.: .:.
CCDS16 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
               10        20        30        40        50        60

       60         70  
pF1KB5 SENPFKDKKT-CIIL
       :::::..::  : ::
CCDS16 SENPFREKKFFCTIL
               70     

>>CCDS8032.1 GNG3 gene_id:2785|Hs108|chr11                (75 aa)
 initn: 267 init1: 267 opt: 272  Z-score: 417.2  bits: 81.2 E(32554): 6.5e-17
Smith-Waterman score: 272; 61.2% identity (83.6% similar) in 67 aa overlap (7-72:9-75)

                 10        20        30        40        50        
pF1KB5   MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPT
               :: .:.:::. :.::..:::. :::::::.::::.::. ::  :::.  .::
CCDS80 MKGETPVNSTMSIGQARKMVEQLKIEASLCRIKVSKAAADLMTYCDAHACEDPLITPVPT
               10        20        30        40        50        60

       60         70  
pF1KB5 SENPFKDKKT-CIIL
       :::::..::  : .:
CCDS80 SENPFREKKFFCALL
               70     

>>CCDS12687.1 GNG8 gene_id:94235|Hs108|chr19              (70 aa)
 initn: 258 init1: 249 opt: 261  Z-score: 401.4  bits: 78.2 E(32554): 4.9e-16
Smith-Waterman score: 261; 50.7% identity (87.7% similar) in 73 aa overlap (1-72:1-70)

               10        20        30        40        50        60
pF1KB5 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
       ::.. :   .::.::.::.::.::..:.:.:::.:.:.:...:: ::..:::.  .:..:
CCDS12 MSNNMA---KIAEARKTVEQLKLEVNIDRMKVSQAAAELLAFCETHAKDDPLVTPVPAAE
                  10        20        30        40        50       

                70  
pF1KB5 NPFKDKKT-CIIL
       :::.::.  :..:
CCDS12 NPFRDKRLFCVLL
        60        70

>>CCDS696.1 GNG5 gene_id:2787|Hs108|chr1                  (68 aa)
 initn: 224 init1: 216 opt: 234  Z-score: 361.6  bits: 70.8 E(32554): 8e-14
Smith-Waterman score: 234; 46.3% identity (85.1% similar) in 67 aa overlap (6-72:2-68)

               10        20        30        40        50        60
pF1KB5 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
            ......:  ...::::::::...:.:::.:.::: ..: ..:. :::: :. .: 
CCDS69     MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSST
                   10        20        30        40        50      

               70  
pF1KB5 NPFKDKKTCIIL
       :::. .:.: .:
CCDS69 NPFRPQKVCSFL
         60        

>>CCDS35107.1 GNG10 gene_id:2790|Hs108|chr9               (68 aa)
 initn: 231 init1: 207 opt: 222  Z-score: 343.9  bits: 67.5 E(32554): 7.8e-13
Smith-Waterman score: 222; 47.8% identity (85.1% similar) in 67 aa overlap (7-72:2-68)

               10         20        30        40        50         
pF1KB5 MSSKTASTNNIAQA-RRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTS
             :..  :.: .: :.::.:::..::::::.:.:.:..:: ..: .: ::.:.:..
CCDS35      MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAG
                    10        20        30        40        50     

      60        70  
pF1KB5 ENPFKDKKTCIIL
        :::.. ..: .:
CCDS35 SNPFREPRSCALL
          60        




72 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:00:17 2016 done: Fri Nov  4 04:00:17 2016
 Total Scan time:  1.330 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]