Result of FASTA (omim) for
pF1KB5643
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5643, 72 aa
1>>>pF1KB5643 72 - 72 aa - 72 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9560+/-0.000284; mu= 8.1223+/- 0.018
mean_var=47.8233+/- 9.586, 0's: 0 Z-trim(116.9): 52 B-trim: 0 in 0/52
Lambda= 0.185462
statistics sampled from 28395 (28470) to 28395 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.334), width: 16
Scan time: 3.360
The best scores are: opt bits E(85289)
XP_016857298 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 451 127.6 1.7e-30
XP_016857299 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 451 127.6 1.7e-30
XP_016857300 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 451 127.6 1.7e-30
NP_061329 (OMIM: 615405) guanine nucleotide-bindin ( 72) 451 127.6 1.7e-30
XP_016882095 (OMIM: 604430) PREDICTED: guanine nuc ( 68) 363 104.0 2e-23
NP_443079 (OMIM: 604430) guanine nucleotide-bindin ( 68) 363 104.0 2e-23
NP_444292 (OMIM: 606981) guanine nucleotide-bindin ( 71) 291 84.8 1.3e-17
XP_016876865 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 291 84.8 1.3e-17
NP_001230702 (OMIM: 606981) guanine nucleotide-bin ( 71) 291 84.8 1.3e-17
XP_016876866 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 291 84.8 1.3e-17
XP_011535148 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 291 84.8 1.3e-17
XP_006720236 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 291 84.8 1.3e-17
NP_001230703 (OMIM: 606981) guanine nucleotide-bin ( 71) 291 84.8 1.3e-17
XP_006711824 (OMIM: 604388) PREDICTED: guanine nuc ( 75) 280 81.8 1.1e-16
NP_001092192 (OMIM: 604388) guanine nucleotide-bin ( 75) 280 81.8 1.1e-16
NP_001092191 (OMIM: 604388) guanine nucleotide-bin ( 75) 280 81.8 1.1e-16
NP_004476 (OMIM: 604388) guanine nucleotide-bindin ( 75) 280 81.8 1.1e-16
XP_011542469 (OMIM: 604388) PREDICTED: guanine nuc ( 75) 280 81.8 1.1e-16
NP_036334 (OMIM: 608941) guanine nucleotide-bindin ( 75) 272 79.7 4.7e-16
XP_006718563 (OMIM: 608941) PREDICTED: guanine nuc ( 75) 272 79.7 4.7e-16
NP_005265 (OMIM: 600874) guanine nucleotide-bindin ( 68) 234 69.5 5e-13
NP_001185593 (OMIM: 604389) guanine nucleotide-bin ( 68) 222 66.3 4.6e-12
NP_001017998 (OMIM: 604389) guanine nucleotide-bin ( 68) 222 66.3 4.6e-12
NP_004117 (OMIM: 604390) guanine nucleotide-bindin ( 73) 181 55.3 9.8e-09
NP_113686 (OMIM: 139391) guanine nucleotide-bindin ( 69) 167 51.6 1.3e-07
NP_001185685 (OMIM: 139391) guanine nucleotide-bin ( 69) 167 51.6 1.3e-07
NP_001185684 (OMIM: 139391) guanine nucleotide-bin ( 69) 167 51.6 1.3e-07
NP_001185683 (OMIM: 139391) guanine nucleotide-bin ( 69) 167 51.6 1.3e-07
NP_001316355 (OMIM: 189970) guanine nucleotide-bin ( 74) 158 49.2 7.1e-07
NP_068774 (OMIM: 189970) guanine nucleotide-bindin ( 74) 158 49.2 7.1e-07
>>XP_016857298 (OMIM: 615405) PREDICTED: guanine nucleot (72 aa)
initn: 451 init1: 451 opt: 451 Z-score: 668.3 bits: 127.6 E(85289): 1.7e-30
Smith-Waterman score: 451; 100.0% identity (100.0% similar) in 72 aa overlap (1-72:1-72)
10 20 30 40 50 60
pF1KB5 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
10 20 30 40 50 60
70
pF1KB5 NPFKDKKTCIIL
::::::::::::
XP_016 NPFKDKKTCIIL
70
>>XP_016857299 (OMIM: 615405) PREDICTED: guanine nucleot (72 aa)
initn: 451 init1: 451 opt: 451 Z-score: 668.3 bits: 127.6 E(85289): 1.7e-30
Smith-Waterman score: 451; 100.0% identity (100.0% similar) in 72 aa overlap (1-72:1-72)
10 20 30 40 50 60
pF1KB5 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
10 20 30 40 50 60
70
pF1KB5 NPFKDKKTCIIL
::::::::::::
XP_016 NPFKDKKTCIIL
70
>>XP_016857300 (OMIM: 615405) PREDICTED: guanine nucleot (72 aa)
initn: 451 init1: 451 opt: 451 Z-score: 668.3 bits: 127.6 E(85289): 1.7e-30
Smith-Waterman score: 451; 100.0% identity (100.0% similar) in 72 aa overlap (1-72:1-72)
10 20 30 40 50 60
pF1KB5 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
10 20 30 40 50 60
70
pF1KB5 NPFKDKKTCIIL
::::::::::::
XP_016 NPFKDKKTCIIL
70
>>NP_061329 (OMIM: 615405) guanine nucleotide-binding pr (72 aa)
initn: 451 init1: 451 opt: 451 Z-score: 668.3 bits: 127.6 E(85289): 1.7e-30
Smith-Waterman score: 451; 100.0% identity (100.0% similar) in 72 aa overlap (1-72:1-72)
10 20 30 40 50 60
pF1KB5 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
10 20 30 40 50 60
70
pF1KB5 NPFKDKKTCIIL
::::::::::::
NP_061 NPFKDKKTCIIL
70
>>XP_016882095 (OMIM: 604430) PREDICTED: guanine nucleot (68 aa)
initn: 363 init1: 363 opt: 363 Z-score: 541.5 bits: 104.0 E(85289): 2e-23
Smith-Waterman score: 363; 77.6% identity (97.0% similar) in 67 aa overlap (6-72:2-68)
10 20 30 40 50 60
pF1KB5 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
..::::::::. :.:::.::.:::::::::..:::::::.:::.::::.:.:.::
XP_016 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASE
10 20 30 40 50
70
pF1KB5 NPFKDKKTCIIL
::::::: ::::
XP_016 NPFKDKKPCIIL
60
>>NP_443079 (OMIM: 604430) guanine nucleotide-binding pr (68 aa)
initn: 363 init1: 363 opt: 363 Z-score: 541.5 bits: 104.0 E(85289): 2e-23
Smith-Waterman score: 363; 77.6% identity (97.0% similar) in 67 aa overlap (6-72:2-68)
10 20 30 40 50 60
pF1KB5 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
..::::::::. :.:::.::.:::::::::..:::::::.:::.::::.:.:.::
NP_443 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASE
10 20 30 40 50
70
pF1KB5 NPFKDKKTCIIL
::::::: ::::
NP_443 NPFKDKKPCIIL
60
>>NP_444292 (OMIM: 606981) guanine nucleotide-binding pr (71 aa)
initn: 291 init1: 283 opt: 291 Z-score: 437.1 bits: 84.8 E(85289): 1.3e-17
Smith-Waterman score: 291; 62.3% identity (85.5% similar) in 69 aa overlap (5-72:3-71)
10 20 30 40 50 60
pF1KB5 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
. .: .:::::. :.::..::.:.:::::::.::::.::: ::. :::: .:.::
NP_444 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASE
10 20 30 40 50
70
pF1KB5 NPFKDKKT-CIIL
:::..:: : ::
NP_444 NPFREKKFFCAIL
60 70
>>XP_016876865 (OMIM: 606981) PREDICTED: guanine nucleot (71 aa)
initn: 291 init1: 283 opt: 291 Z-score: 437.1 bits: 84.8 E(85289): 1.3e-17
Smith-Waterman score: 291; 62.3% identity (85.5% similar) in 69 aa overlap (5-72:3-71)
10 20 30 40 50 60
pF1KB5 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
. .: .:::::. :.::..::.:.:::::::.::::.::: ::. :::: .:.::
XP_016 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASE
10 20 30 40 50
70
pF1KB5 NPFKDKKT-CIIL
:::..:: : ::
XP_016 NPFREKKFFCAIL
60 70
>>NP_001230702 (OMIM: 606981) guanine nucleotide-binding (71 aa)
initn: 291 init1: 283 opt: 291 Z-score: 437.1 bits: 84.8 E(85289): 1.3e-17
Smith-Waterman score: 291; 62.3% identity (85.5% similar) in 69 aa overlap (5-72:3-71)
10 20 30 40 50 60
pF1KB5 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
. .: .:::::. :.::..::.:.:::::::.::::.::: ::. :::: .:.::
NP_001 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASE
10 20 30 40 50
70
pF1KB5 NPFKDKKT-CIIL
:::..:: : ::
NP_001 NPFREKKFFCAIL
60 70
>>XP_016876866 (OMIM: 606981) PREDICTED: guanine nucleot (71 aa)
initn: 291 init1: 283 opt: 291 Z-score: 437.1 bits: 84.8 E(85289): 1.3e-17
Smith-Waterman score: 291; 62.3% identity (85.5% similar) in 69 aa overlap (5-72:3-71)
10 20 30 40 50 60
pF1KB5 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
. .: .:::::. :.::..::.:.:::::::.::::.::: ::. :::: .:.::
XP_016 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASE
10 20 30 40 50
70
pF1KB5 NPFKDKKT-CIIL
:::..:: : ::
XP_016 NPFREKKFFCAIL
60 70
72 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 04:00:18 2016 done: Fri Nov 4 04:00:18 2016
Total Scan time: 3.360 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]