FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5655, 1228 aa
  1>>>pF1KB5655 1228 - 1228 aa - 1228 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6935+/-0.00144; mu= 7.2002+/- 0.086
 mean_var=193.6948+/-39.404, 0's: 0 Z-trim(104.9): 98  B-trim: 73 in 2/50
 Lambda= 0.092154
 statistics sampled from 8083 (8165) to 8083 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.58), E-opt: 0.2 (0.251), width:  16
 Scan time:  5.190

The best scores are:                                      opt bits E(32554)
CCDS3635.1 MMRN1 gene_id:22915|Hs108|chr4          (1228) 7936 1069.3       0


>>CCDS3635.1 MMRN1 gene_id:22915|Hs108|chr4               (1228 aa)
 initn: 7936 init1: 7936 opt: 7936  Z-score: 5713.4  bits: 1069.3 E(32554):    0
Smith-Waterman score: 7936; 100.0% identity (100.0% similar) in 1228 aa overlap (1-1228:1-1228)

               10        20        30        40        50        60
pF1KB5 MKGARLFVLLSSLWSGGIGLNNSKHSWTIPEDGNSQKTMPSASVPPNKIQSLQILPTTRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MKGARLFVLLSSLWSGGIGLNNSKHSWTIPEDGNSQKTMPSASVPPNKIQSLQILPTTRV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 MSAEIATTPEARTSEDSLLKSTLPPSETSAPAEGVRNQTLTSTEKAEGVVKLQNLTLPTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MSAEIATTPEARTSEDSLLKSTLPPSETSAPAEGVRNQTLTSTEKAEGVVKLQNLTLPTN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ASIKFNPGAESVVLSNSTLKFLQSFARKSNEQATSLNTVGGTGGIGGVGGTGGVGNRAPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 ASIKFNPGAESVVLSNSTLKFLQSFARKSNEQATSLNTVGGTGGIGGVGGTGGVGNRAPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 ETYLSRGDSSSSQRTDYQKSNFETTRGKNWCAYVHTRLSPTVILDNQVTYVPGGKGPCGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 ETYLSRGDSSSSQRTDYQKSNFETTRGKNWCAYVHTRLSPTVILDNQVTYVPGGKGPCGW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 TGGSCPQRSQKISNPVYRMQHKIVTSLDWRCCPGYSGPKCQLRAQEQQSLIHTNQAESHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 TGGSCPQRSQKISNPVYRMQHKIVTSLDWRCCPGYSGPKCQLRAQEQQSLIHTNQAESHT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 AVGRGVAEQQQQQGCGDPEVMQKMTDQVNYQAMKLTLLQKKIDNISLTVNDVRNTYSSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 AVGRGVAEQQQQQGCGDPEVMQKMTDQVNYQAMKLTLLQKKIDNISLTVNDVRNTYSSLE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 GKVSEDKSREFQSLLKGLKSKSINVLIRDIVREQFKIFQNDMQETVAQLFKTVSSLSEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 GKVSEDKSREFQSLLKGLKSKSINVLIRDIVREQFKIFQNDMQETVAQLFKTVSSLSEDL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 ESTRQIIQKVNESVVSIAAQQKFVLVQENRPTLTDIVELRNHIVNVRQEMTLTCEKPIKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 ESTRQIIQKVNESVVSIAAQQKFVLVQENRPTLTDIVELRNHIVNVRQEMTLTCEKPIKE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 LEVKQTHLEGALEQEHSRSILYYESLNKTLSKLKEVHEQLLSTEQVSDQKNAPAAESVSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 LEVKQTHLEGALEQEHSRSILYYESLNKTLSKLKEVHEQLLSTEQVSDQKNAPAAESVSN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 NVTEYMSTLHENIKKQSLMMLQMFEDLHIQESKINNLTVSLEMEKESLRGECEDMLSKCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 NVTEYMSTLHENIKKQSLMMLQMFEDLHIQESKINNLTVSLEMEKESLRGECEDMLSKCR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 NDFKFQLKDTEENLHVLNQTLAEVLFPMDNKMDKMSEQLNDLTYDMEILQPLLEQGASLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 NDFKFQLKDTEENLHVLNQTLAEVLFPMDNKMDKMSEQLNDLTYDMEILQPLLEQGASLR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 QTMTYEQPKEAIVIRKKIENLTSAVNSLNFIIKELTKRHNLLRNEVQGRDDALERRINEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 QTMTYEQPKEAIVIRKKIENLTSAVNSLNFIIKELTKRHNLLRNEVQGRDDALERRINEY
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB5 ALEMEDGLNKTMTIINNAIDFIQDNYALKETLSTIKDNSEIHHKCTSDMETILTFIPQFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 ALEMEDGLNKTMTIINNAIDFIQDNYALKETLSTIKDNSEIHHKCTSDMETILTFIPQFH
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB5 RLNDSIQTLVNDNQRYNFVLQVAKTLAGIPRDEKLNQSNFQKMYQMFNETTSQVRKYQQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 RLNDSIQTLVNDNQRYNFVLQVAKTLAGIPRDEKLNQSNFQKMYQMFNETTSQVRKYQQN
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB5 MSHLEEKLLLTTKISKNFETRLQDIESKVTQTLIPYYISVKKGSVVTNERDQALQLQVLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MSHLEEKLLLTTKISKNFETRLQDIESKVTQTLIPYYISVKKGSVVTNERDQALQLQVLN
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB5 SRFKALEAKSIHLSINFFSLNKTLHEVLTMCHNASTSVSELNATIPKWIKHSLPDIQLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 SRFKALEAKSIHLSINFFSLNKTLHEVLTMCHNASTSVSELNATIPKWIKHSLPDIQLLQ
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB5 KGLTEFVEPIIQIKTQAALSNLTCCIDRSLPGSLANVVKSQKQVKSLPKKINALKKPTVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 KGLTEFVEPIIQIKTQAALSNLTCCIDRSLPGSLANVVKSQKQVKSLPKKINALKKPTVN
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KB5 LTTVLIGRTQRNTDNIIYPEEYSSCSRHPCQNGGTCINGRTSFTCACRHPFTGDNCTIKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 LTTVLIGRTQRNTDNIIYPEEYSSCSRHPCQNGGTCINGRTSFTCACRHPFTGDNCTIKL
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KB5 VEENALAPDFSKGSYRYAPMVAFFASHTYGMTIPGPILFNNLDVNYGASYTPRTGKFRIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 VEENALAPDFSKGSYRYAPMVAFFASHTYGMTIPGPILFNNLDVNYGASYTPRTGKFRIP
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KB5 YLGVYVFKYTIESFSAHISGFLVVDGIDKLAFESENINSEIHCDRVLTGDALLELNYGQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 YLGVYVFKYTIESFSAHISGFLVVDGIDKLAFESENINSEIHCDRVLTGDALLELNYGQE
             1150      1160      1170      1180      1190      1200

             1210      1220        
pF1KB5 VWLRLAKGTIPAKFPPVTTFSGYLLYRT
       ::::::::::::::::::::::::::::
CCDS36 VWLRLAKGTIPAKFPPVTTFSGYLLYRT
             1210      1220        




1228 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 17:52:30 2016 done: Thu Nov  3 17:52:31 2016
 Total Scan time:  5.190 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]