Result of FASTA (omim) for
pF1KB5656
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5656, 347 aa
1>>>pF1KB5656 347 - 347 aa - 347 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7641+/-0.00043; mu= 1.2851+/- 0.027
mean_var=257.7080+/-52.360, 0's: 0 Z-trim(118.4): 51 B-trim: 68 in 1/58
Lambda= 0.079893
statistics sampled from 31176 (31227) to 31176 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.366), width: 16
Scan time: 8.830
The best scores are: opt bits E(85289)
NP_001291433 (OMIM: 605534) high mobility group pr ( 347) 2262 273.8 3.8e-73
NP_060670 (OMIM: 605534) high mobility group prote ( 347) 2262 273.8 3.8e-73
XP_011519460 (OMIM: 605534) PREDICTED: high mobili ( 347) 2262 273.8 3.8e-73
NP_001291434 (OMIM: 605534) high mobility group pr ( 234) 1515 187.6 2.4e-47
NP_006330 (OMIM: 605535) SWI/SNF-related matrix-as ( 317) 984 126.5 7.9e-29
XP_016881633 (OMIM: 605535) PREDICTED: SWI/SNF-rel ( 316) 979 125.9 1.2e-28
NP_003137 (OMIM: 604328) FACT complex subunit SSRP ( 709) 251 42.3 0.0038
XP_016873669 (OMIM: 604328) PREDICTED: FACT comple ( 843) 251 42.4 0.0042
NP_001288158 (OMIM: 300193,300915) high mobility g ( 200) 237 40.2 0.0047
NP_005333 (OMIM: 300193,300915) high mobility grou ( 200) 237 40.2 0.0047
NP_001288157 (OMIM: 300193,300915) high mobility g ( 200) 237 40.2 0.0047
NP_001288160 (OMIM: 300193,300915) high mobility g ( 220) 237 40.2 0.0051
>>NP_001291433 (OMIM: 605534) high mobility group protei (347 aa)
initn: 2262 init1: 2262 opt: 2262 Z-score: 1434.2 bits: 273.8 E(85289): 3.8e-73
Smith-Waterman score: 2262; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KB5 MENLMTSSTLPPLFADEDGSKESNDLATTGLNHPEVPYSSGATSSTNNPEFVEDLSQGQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MENLMTSSTLPPLFADEDGSKESNDLATTGLNHPEVPYSSGATSSTNNPEFVEDLSQGQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 RKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 KSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMP
250 260 270 280 290 300
310 320 330 340
pF1KB5 LPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR
310 320 330 340
>>NP_060670 (OMIM: 605534) high mobility group protein 2 (347 aa)
initn: 2262 init1: 2262 opt: 2262 Z-score: 1434.2 bits: 273.8 E(85289): 3.8e-73
Smith-Waterman score: 2262; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KB5 MENLMTSSTLPPLFADEDGSKESNDLATTGLNHPEVPYSSGATSSTNNPEFVEDLSQGQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MENLMTSSTLPPLFADEDGSKESNDLATTGLNHPEVPYSSGATSSTNNPEFVEDLSQGQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 RKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 KSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMP
250 260 270 280 290 300
310 320 330 340
pF1KB5 LPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR
:::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR
310 320 330 340
>>XP_011519460 (OMIM: 605534) PREDICTED: high mobility g (347 aa)
initn: 2262 init1: 2262 opt: 2262 Z-score: 1434.2 bits: 273.8 E(85289): 3.8e-73
Smith-Waterman score: 2262; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KB5 MENLMTSSTLPPLFADEDGSKESNDLATTGLNHPEVPYSSGATSSTNNPEFVEDLSQGQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MENLMTSSTLPPLFADEDGSKESNDLATTGLNHPEVPYSSGATSSTNNPEFVEDLSQGQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 RKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 KSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMP
250 260 270 280 290 300
310 320 330 340
pF1KB5 LPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR
310 320 330 340
>>NP_001291434 (OMIM: 605534) high mobility group protei (234 aa)
initn: 1515 init1: 1515 opt: 1515 Z-score: 971.0 bits: 187.6 E(85289): 2.4e-47
Smith-Waterman score: 1515; 100.0% identity (100.0% similar) in 234 aa overlap (114-347:1-234)
90 100 110 120 130 140
pF1KB5 RGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSK
::::::::::::::::::::::::::::::
NP_001 MNERREQLRAKRPEVPFPEITRMLGNEWSK
10 20 30
150 160 170 180 190 200
pF1KB5 LPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHD
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB5 HEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTA
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB5 VEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMPLPGSGETPTVDTIDSYMNRLHSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMPLPGSGETPTVDTIDSYMNRLHSI
160 170 180 190 200 210
330 340
pF1KB5 ILANPQDNENFIATVREVVNRLDR
::::::::::::::::::::::::
NP_001 ILANPQDNENFIATVREVVNRLDR
220 230
>>NP_006330 (OMIM: 605535) SWI/SNF-related matrix-associ (317 aa)
initn: 932 init1: 858 opt: 984 Z-score: 638.6 bits: 126.5 E(85289): 7.9e-29
Smith-Waterman score: 984; 48.4% identity (77.8% similar) in 320 aa overlap (31-345:1-312)
10 20 30 40 50
pF1KB5 MENLMTSSTLPPLFADEDGSKESNDLATTGLNH-PEVPYSSGATSSTNNPE----FVEDL
..: :. : ...: .. . : :: .
NP_006 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTV
10 20 30
60 70 80 90 100 110
pF1KB5 SQGQLLQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMN
.: . .:. : :.. ::.: .::: : ::.:::: : :.::.:.::::::.:
NP_006 KQER---GEGPRA--GEKGSHEEEPVKKRG-WPKGKKRKKIL--PNGPKAPVTGYVRFLN
40 50 60 70 80
120 130 140 150 160 170
pF1KB5 ERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEA
:::::.:...:..::::::.::: ::::: : :::::::::.:.:..:::::. ::..::
NP_006 ERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEA
90 100 110 120 130 140
180 190 200 210 220 230
pF1KB5 YKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAE
::. ..: :... : ... .. . .: . :.::.::::::::...::::::
NP_006 YKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAE
150 160 170 180 190 200
240 250 260 270 280 290
pF1KB5 LRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSS
::.::: :. :::.::.::.:..:: .: :.:: .. :. :. .:::.:...::.::.:
NP_006 LRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTAS
210 220 230 240 250 260
300 310 320 330 340
pF1KB5 FASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR
:::.:.::.:::::. :.: :: :::. : .: ..:..:. ..:.. ..
NP_006 FASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEKLIVRIKEILAQVASEHL
270 280 290 300 310
>>XP_016881633 (OMIM: 605535) PREDICTED: SWI/SNF-related (316 aa)
initn: 914 init1: 447 opt: 979 Z-score: 635.5 bits: 125.9 E(85289): 1.2e-28
Smith-Waterman score: 982; 48.8% identity (76.9% similar) in 320 aa overlap (31-345:1-311)
10 20 30 40 50
pF1KB5 MENLMTSSTLPPLFADEDGSKESNDLATTGLNH-PEVPYSSGATSSTNNPE----FVEDL
..: :. : ...: .. . : :: .
XP_016 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTV
10 20 30
60 70 80 90 100 110
pF1KB5 SQGQLLQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMN
.: . .:. : :.. ::.: .::: : ::.:::: : :.::.:.::::::.:
XP_016 KQER---GEGPRA--GEKGSHEEEPVKKRG-WPKGKKRKKIL--PNGPKAPVTGYVRFLN
40 50 60 70 80
120 130 140 150 160 170
pF1KB5 ERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEA
:::::.:...:..::::::.::: ::::: : :::::::::.:.:..:::::. ::..::
XP_016 ERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEA
90 100 110 120 130 140
180 190 200 210 220 230
pF1KB5 YKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAE
::. ..: :... :. . . : : . :.::.::::::::...::::::
XP_016 YKMCTEKIQEKKIKKDSSSGLMNTLLNGH-KGGDCDGFSTFDVPIFTEEFLDQNKAREAE
150 160 170 180 190 200
240 250 260 270 280 290
pF1KB5 LRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSS
::.::: :. :::.::.::.:..:: .: :.:: .. :. :. .:::.:...::.::.:
XP_016 LRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTAS
210 220 230 240 250 260
300 310 320 330 340
pF1KB5 FASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR
:::.:.::.:::::. :.: :: :::. : .: ..:..:. ..:.. ..
XP_016 FASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEKLIVRIKEILAQVASEHL
270 280 290 300 310
>>NP_003137 (OMIM: 604328) FACT complex subunit SSRP1 [H (709 aa)
initn: 216 init1: 126 opt: 251 Z-score: 177.6 bits: 42.3 E(85289): 0.0038
Smith-Waterman score: 253; 27.6% identity (61.0% similar) in 228 aa overlap (39-252:474-694)
10 20 30 40 50 60
pF1KB5 TLPPLFADEDGSKESNDLATTGLNHPEVPYSSGATSSTNNP-EFVEDLSQG-QLLQSESS
:. :. . :: : ::... . : ::
NP_003 SDEDQHDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASS
450 460 470 480 490 500
70 80 90 100 110
pF1KB5 NAAEGNEQRHEDEQRS-KRGGWSKGRK-RKKPL-----RDSNAPKSPLTGYVRFMNERRE
.. ::. .: : .... :.. .: :: ::::. .: :::: :...:. ..: ::
NP_003 SSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASRE
510 520 530 540 550 560
120 130 140 150 160 170
pF1KB5 QLRAKRPEVPFPEITRMLGNEW---SKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAY
.... .: . . .... :. : :: :: .: ..: :: :. ::: : . :.
NP_003 KIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESS
570 580 590 600 610 620
180 190 200 210 220 230
pF1KB5 KVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFL--NHSKAREA
: . : . . : : ..... ... .. . ...: : ..::. ..:.. :
NP_003 KRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSES--FK----SKEFVSSDESSSGEN
630 640 650 660 670
240 250 260 270 280 290
pF1KB5 ELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTS
. .. :. . . ::.. :
NP_003 KSKKKRRRSEDSEEEELASTPPSSEDSASGSDE
680 690 700
>>XP_016873669 (OMIM: 604328) PREDICTED: FACT complex su (843 aa)
initn: 216 init1: 126 opt: 251 Z-score: 176.6 bits: 42.4 E(85289): 0.0042
Smith-Waterman score: 253; 27.6% identity (61.0% similar) in 228 aa overlap (39-252:608-828)
10 20 30 40 50 60
pF1KB5 TLPPLFADEDGSKESNDLATTGLNHPEVPYSSGATSSTNNP-EFVEDLSQG-QLLQSESS
:. :. . :: : ::... . : ::
XP_016 SDEDQHDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASS
580 590 600 610 620 630
70 80 90 100 110
pF1KB5 NAAEGNEQRHEDEQRS-KRGGWSKGRK-RKKPL-----RDSNAPKSPLTGYVRFMNERRE
.. ::. .: : .... :.. .: :: ::::. .: :::: :...:. ..: ::
XP_016 SSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASRE
640 650 660 670 680 690
120 130 140 150 160 170
pF1KB5 QLRAKRPEVPFPEITRMLGNEW---SKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAY
.... .: . . .... :. : :: :: .: ..: :: :. ::: : . :.
XP_016 KIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESS
700 710 720 730 740 750
180 190 200 210 220 230
pF1KB5 KVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFL--NHSKAREA
: . : . . : : ..... ... .. . ...: : ..::. ..:.. :
XP_016 KRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSES--FK----SKEFVSSDESSSGEN
760 770 780 790 800 810
240 250 260 270 280 290
pF1KB5 ELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTS
. .. :. . . ::.. :
XP_016 KSKKKRRRSEDSEEEELASTPPSSEDSASGSDE
820 830 840
>>NP_001288158 (OMIM: 300193,300915) high mobility group (200 aa)
initn: 313 init1: 175 opt: 237 Z-score: 175.7 bits: 40.2 E(85289): 0.0047
Smith-Waterman score: 237; 29.7% identity (58.8% similar) in 182 aa overlap (33-212:31-196)
10 20 30 40 50 60
pF1KB5 NLMTSSTLPPLFADEDGSKESNDLATTGLNHPEVPYSSGATSSTNNPEFVEDLSQGQLLQ
.:::: . : : . : . .: . .
NP_001 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNF-AEFSKKCSERWKTMSGKE--K
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 SESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLR
:. .. :.... :.. :. : : .:: :.:: : :::: : .:. : .: : ...
NP_001 SKFDEMAKADKVRYDREM--KDYGPAKGGKKKK---DPNAPKRPPSGFFLFCSEFRPKIK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 AKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRK
. : . . .... ::. :..: ::: :. .: . ::.: :.. .:. :.
NP_001 STNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYK--------SKG
120 130 140 150 160
190 200 210 220 230 240
pF1KB5 TQDRQKG--KSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLR
: :: : :. . .. ...:.: : .:
NP_001 KFDGAKGPAKVARKKVEEEDEEEEEEEEEEEEEEDE
170 180 190 200
250 260 270 280 290 300
pF1KB5 KSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMP
>>NP_005333 (OMIM: 300193,300915) high mobility group pr (200 aa)
initn: 313 init1: 175 opt: 237 Z-score: 175.7 bits: 40.2 E(85289): 0.0047
Smith-Waterman score: 237; 29.7% identity (58.8% similar) in 182 aa overlap (33-212:31-196)
10 20 30 40 50 60
pF1KB5 NLMTSSTLPPLFADEDGSKESNDLATTGLNHPEVPYSSGATSSTNNPEFVEDLSQGQLLQ
.:::: . : : . : . .: . .
NP_005 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNF-AEFSKKCSERWKTMSGKE--K
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 SESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLR
:. .. :.... :.. :. : : .:: :.:: : :::: : .:. : .: : ...
NP_005 SKFDEMAKADKVRYDREM--KDYGPAKGGKKKK---DPNAPKRPPSGFFLFCSEFRPKIK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 AKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRK
. : . . .... ::. :..: ::: :. .: . ::.: :.. .:. :.
NP_005 STNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYK--------SKG
120 130 140 150 160
190 200 210 220 230 240
pF1KB5 TQDRQKG--KSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLR
: :: : :. . .. ...:.: : .:
NP_005 KFDGAKGPAKVARKKVEEEDEEEEEEEEEEEEEEDE
170 180 190 200
250 260 270 280 290 300
pF1KB5 KSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMP
347 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 04:01:31 2016 done: Fri Nov 4 04:01:32 2016
Total Scan time: 8.830 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]